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. 2011 May 14;51(3):179–185. doi: 10.1016/j.jcv.2011.04.010

Table 1.

Primers and probes.

Virus Sequence 5′–3′ Target gene Labels 5′/3′
Influenza A F GACAAGACCAATCCTGTCACYTCTG
R AAGCGTCTACGCTGCAGTCC M
P TTCACGCTCACCGTGCCCAGTGAGC LCRED610/BBQ
Influenza B F TCGCTGTTTGGAGACACAAT
R TTCTTTCCCACCGAACCA M
P AGAAGATGGAGAAGGCAAAGCAGAACT CYAN500/DB
Enterovirus F GGCCCTGAATGCGGCTAAT
R GGGATTGTCACCATAAGCAGCC 5′-UTR
P GCGGAACCGACTACTTTGGGT FAM/MGB-NFQ
Adenovirus F CAGGACGCCTCGGRGTAYCTSAG
R GGAGCCACVGTGGGRTT Hexon LCRED670/BBQ
P CGGGTCTGGTGCAGTTTGCCCGC
RSV F ATGAACAGTTTAACATTACCAAGT
R GTTTTGCCATAGCATGACAC F
P1 TGACTTCAAAAACAGATGTAAGCAGCTCC LCRED610/BBQ
P2 TTATGACATCAAAAACAGACATAAGCAGCTCAG
Rhinovirus F CAAGCACTTCTGTTTCCCC
R GGCAGCCACGCAGGC 5′-UTR
P1 TAGACCTGGCAGATGA+G+G+CT FAM/BBQ
P2 TAGTTTGGTCGA+T+GA+GGCT FAM/BBQ
P3 CTAGTYTGGTCGAT+G+A+GGC FAM/BBQ
Coronavirus F1 GGTGGYTGGGAYGATATGTTACG
F2 GCTRAGCATGATTTCTTTACTTGG Replicase
R1 KRTTTGGCATAGCACGATCACA
R2 CARTYTTKTTCATCAAAGTTACGCA Replicase
P1 ATGTTGACAAYCCTGTWCTTATGGGTTGGG FAM/MGB-NFQ
P2 CAGARTCATTTATGGTAATGTTAGTAGACA FAM/MGB-NFQ
Metapneumovirus F AGCTTCAGTCAATTCAACAGAAG
R CCTGCAGATGTYGGCATGT F
P TGTTGTGCGGCAGTTTTCAGACAATGC LCRED670/BBQ
Parechovirus F CTGGGGCCAAAAGCCA
R GGTACCTTCTGGGCATCCTTC 5′-UTR
P AAACACTAGTTGTAWGGCCC FAM/MGB-NFQ
Parainfluenzavirus 1 F ATCTCATTATTACCYGGACCAAGTCTACT
R CATCCTTGAGTGATTAAGTTTGATGAATA HN
P AGGATGTGTTAGAYTACCTTCATTATCAATTGGTGATG CYAN500/DB
Parainfluenzavirus 2 F CTGCAGCTATGAGTAATC
R TGATCGAGCATCTGGAAT NP
P AGCCATGCATTCACCAGAAGCCAGC LCRED610/BBQ
Parainfluenzavirus 3 F ACTCTATCYACTCTCAGACC
R TGGGATCTCTGAGGATAC NP
P AAGGGACCACGCGCTCCTTTCATC LCRED670/BBQ
Parainfluenzavirus 4 F GATCCACAGCAAAGATTCAC
R GCCTGTAAGGAAAGCAGAGA NP
P TATCATCATCTGCCAAATCGGCAA HEX/BHQ
HBoV F CAAATCTCTTCTGGCTACACG
R CTCTGCGATCTCTATATTGAAGG NS1
P ATGTTGCCGCCAGTAACTCCACC LCRED670/BBQ
IC (EAV) F CATCTCTTGCTTTGCTCCTTAG
R AGCCGCACCTTCACATTG Replicase
P TGTGGGCAATAATGTTGTTCTGACAGCG HEX/BHQ

+ denotes a locked nucleic acid (LNA) nucleotide.