Table 1.
References for traditional NAAT protocols
| Author | Target | Detection procedure |
|---|---|---|
| Influenza virus | ||
| Ellis and Zambon (2002) | Review | |
| Parainfluenza (these viruses are generally part of multiplex reactions) | ||
| Aguilar et al. (2000) | Hexon, 300 bp/139 bp, in urine | A–H |
| Hibbitts et al. (2003) | HN gene | NASBA, NucliSens Basic kit + ECL detection |
| RSV | ||
| Paton et al. (1992) | F1 fusion protein, 243 bp | A |
| Freymuth et al. (1995) | N gene, 278 bp, 1B gene, NS | EIA, EIA |
| Eugene-Ruellan et al. (1998) | L polymerase gene | A-RFLP |
| Falsey et al. (2002) | F gene, 411/263 bp | Nested-A |
| Human metapneumovirus | ||
| van den Hoogen et al. (2001) | Primary description of the virus | |
| Mackay et al. (2003) | N gene | EIA |
| Coronaviruses | ||
| Ksiazek et al. (2003) | sars polymerase gene | A |
| Yam et al. (2003) | RNA polymerase | A |
| Vabret et al. (2005) | N gene(NL-63) | N-A |
| Woo et al. (2005) | HKU1 | A-sequencing |
| Adenovirus | ||
| Raty et al. (1999) | Hexon, 308 bp | A + H |
| Pring-Akerblom and Adrian (1994) | Hexon, 1551 bp; types, 8, 31, 40, 41 | A + RFLP |
| Kidd et al. (1996) | VA region, variable, subgenera | A + RFLP |
| Morris et al. (1996) | Hexon, 300 bp/243 bp, subgenus C | N-A types |
| Tiemessen and Nel (1996) | Long-fiber gene, 152 bp, subgenus F | A–H |
| Avellon et al. (2001) | Hexon, 168 bp, polyvalent | A |
| Allard et al. (2001) | Hexon, 301 bp/171, typing | N-A–RFLP |
| Rhinovirus | ||
| Gamma et al. (1989) | 5′-Non-coding region | A |
| Hyypia et al. (1989) | 5′-Non-coding region | A + H |
| Arruda and Hayden (1993) | 5′-Non-coding region | A |
| Johnston et al. (1993) | 5′-Non-coding region, 900 bp | A + H |
| Santti et al. (1997) | 5′-Non-coding region, 126/96/533 bp | A |
| Samuelson et al. (1998) | 5′-Non-coding region | NASBA, ECL |
| Andeweg et al. (1999) | 5′-Non-coding region-VP4 | N-A–H |
| Steininger et al. (2001) | 5′-Non-coding region, 106/93 bp | N-A |
| Billaud et al. (2003) | 5′-Non-coding region, rhino v | N-A |
| Loens et al. (2003a) | 5′-Non-coding region | NASBA–ECL |
| Deffernez et al. (2004) | 5′-Non-coding region | A |
| Mycoplasma pneumoniae | ||
| Loens et al. (2003b) | Review | |
| Daxboeck et al. (2003) | Review | |
| Chlamydophila pneumoniae | ||
| Dowell et al. (2001) | Review | |
| Boman and Hammerschlag (2002) | Review | |
| Legionella pneumophila | ||
| Miller et al. (1993) | ENVIRO AmpKit | H |
| Jaulhac et al. (1992) | mip gene Legionella pneumophila | A |
| Lindsay et al. (1994) | amp mip gene | A + H |
| Matsiota-Bernard et al. (1994) | ENVIRO AmpKit, 5S RNA gene/mip | A + H |
| Jonas et al. (1995) | 16S RNA gene, 386 bp | A + H |
| Van der Zee et al., 2002a, Van der Zee et al., 2002b | 16S RNA gene Leg. spp.—Legionella pneumophila | A + H |
A, agarose gel electrophoresis; N, nested; EIA, enzyme immunoassay; H, hybridization; RFLP: restriction fragment length polymorphism; ECL, electrochemoluminescence.