Table 2. DMRs and their relationship to genes and GH elements in WGCNA modules.

Module	Genes with DMRs	Percent of module genes	Total GH elements	GH elements with DMRs (promoter, enhancer)	Percent of module GH elements
Green	34	3.2%	29,456	85 (14, 71)	0.29%
Purple	0	0.0%	13,144	9 (0, 9)	0.07%
Black	7	1.0%	18,924	29 (2, 27)	0.15%
Brown	8	0.5%	44,637	43 (4, 39)	0.10%
Turquoise	9	0.4%	55,670	63 (9, 54)	0.11%
Greenyellow	3	1.4%	5,538	3 (0, 3)	0.05%
Tan	0	0.0%	3,918	2 (0, 2)	0.05%
Red	7	0.8%	20,300	20 (4,16)	0.10%
Salmon	2	1.6%	3,581	3 (1, 2)	0.08%
Yellow	5	0.4%	18,503	23 (7, 16)	0.12%
Cyan	0	0.0%	672	2 (0, 2)	0.30%
Midnightblue	0	0.0%	396	1 (0,1)	0.25%
Pink	0	0.1%	12,661	19 (3, 16)	0.15%
Magenta	2	0.3%	13,906	21 (7, 14)	0.15%
Blue	13	0.6%	59,406	68 (14, 54)	0.11%
Grey/unassigned	4	0.3%	30,967	28 (8, 20)	0.09%

The number of genes overlapping a DMR in each module is given, followed by the percent of genes containing a DMR among all genes in the module, the total number of GH elements mapped to genes in the module, the number of GH elements overlapping a DMR (further broken down into the number of promoters and number of enhancers overlapping a DMR), and the percent of GH elements containing a DMR among all GH elements mapped to the module. DMR = Differentially methylated region. GH = GeneHancer.