Table 2. DMRs and their relationship to genes and GH elements in WGCNA modules.
Module | Genes with DMRs | Percent of module genes | Total GH elements | GH elements with DMRs (promoter, enhancer) | Percent of module GH elements |
---|---|---|---|---|---|
Green | 34 | 3.2% | 29,456 | 85 (14, 71) | 0.29% |
Purple | 0 | 0.0% | 13,144 | 9 (0, 9) | 0.07% |
Black | 7 | 1.0% | 18,924 | 29 (2, 27) | 0.15% |
Brown | 8 | 0.5% | 44,637 | 43 (4, 39) | 0.10% |
Turquoise | 9 | 0.4% | 55,670 | 63 (9, 54) | 0.11% |
Greenyellow | 3 | 1.4% | 5,538 | 3 (0, 3) | 0.05% |
Tan | 0 | 0.0% | 3,918 | 2 (0, 2) | 0.05% |
Red | 7 | 0.8% | 20,300 | 20 (4,16) | 0.10% |
Salmon | 2 | 1.6% | 3,581 | 3 (1, 2) | 0.08% |
Yellow | 5 | 0.4% | 18,503 | 23 (7, 16) | 0.12% |
Cyan | 0 | 0.0% | 672 | 2 (0, 2) | 0.30% |
Midnightblue | 0 | 0.0% | 396 | 1 (0,1) | 0.25% |
Pink | 0 | 0.1% | 12,661 | 19 (3, 16) | 0.15% |
Magenta | 2 | 0.3% | 13,906 | 21 (7, 14) | 0.15% |
Blue | 13 | 0.6% | 59,406 | 68 (14, 54) | 0.11% |
Grey/unassigned | 4 | 0.3% | 30,967 | 28 (8, 20) | 0.09% |
The number of genes overlapping a DMR in each module is given, followed by the percent of genes containing a DMR among all genes in the module, the total number of GH elements mapped to genes in the module, the number of GH elements overlapping a DMR (further broken down into the number of promoters and number of enhancers overlapping a DMR), and the percent of GH elements containing a DMR among all GH elements mapped to the module. DMR = Differentially methylated region. GH = GeneHancer.