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. 2019 Nov 4:bbz086. doi: 10.1093/bib/bbz086

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© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

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Workflow overview. The main steps suggested for NGS analysis and the corresponding file types are indicated in the boxes. Software names are displayed in red. Green dashed lines show particular algorithms for quasispecies reconstruction and SNV detection.