Table 1.

URLs for a selected subset of the methods in Peters et al. (2006)

Name	URL
IEDBa	http://tools.immuneepitope.org/analyze/html/mhc_binding.html
NetMHCb	http://cbs.dtu.dk/services/NetMHC
BIMAS	http://thr.cit.nih.gov/cgi-bin/molbio/ken_parker_comboform
hla_a2_smm	http://zlab.bu.edu/SMM-cgi/peptide1.cgi
hlaligand	http://hlaligand.ouhsc.edu/prediction.htm
libscore	http://hypernig.nig.ac.jp/cgi-bin/Lib-score/request.rb
mhcpred	http://www.jenner.ac.uk/MHCPred/
multipredann	http://research.i2r.a-star.edu.sg/multipred/HTML/predict.html
pepdist	http://www.pepdist.cs.huji.ac.il/
predbalbc	http://antigen.i2r.a-star.edu.sg/predBalbc/
rankpep	http://mif.dfci.harvard.edu/Tools/rankpep.html
svmhc	http://www.sbc.su.se/svmhc/new.cgi
syfpeithi	http://www.syfpeithi.de/

^aThe SMM, ARB, and ANN methods from Peters et al. (2006).

^bUpdated version of the ANN method from Peters et al. (2006).