Table 1.
Target | Sequence (5′ → 3′) | Function | Product size | Primer source |
---|---|---|---|---|
HBoV | CACKCCCAGGAARTGACGTAT | Forward primer | 118 bp | This study |
3′ non-coding region | CCAGAGATGTTCACTCGCCGGA | Reverse primer | ||
TCAGACTGCATCCGGTCTa | Probe |
Platinum ® Quantitative PCR SuperMix-UDG Invitrogen enzyme (Cat.No. 11730-005) was used for PCR amplification of the above targets in a monoplex format in a final 25ul volume reaction (containing 20 ul of master mix and 5ul of nucleic acid extract) with 3 mM MgCl2, 400 nM primers and 120 nM probe concentration.
Cycling conditions were 50 °C for 2 min, 95 °C for 2 min, 40 cycles at 95 °C for 15 s and 60 °C for 1 min and acquiring on FAM for both assays.
= MGB probe. Fluorophore = FAM, Quencher = NFQ (Life technologies).