Table 2. Sarek resource usage.
Resource usage during a Sarek run on a WGS 90X/90X coverage medulloblastoma dataset on a 48-threaded computer node, starting from compressed FASTQ files. The storage resources refer to result files only. The total storage including all temporary data was 3.7 TB.
| Input
data |
Mapping, merging,
deduplication |
Quality score
recalibration |
Variant calling,
annotation |
Total | |
|---|---|---|---|---|---|
| Storage | 458 GB | 530 GB | 386 GB | 4 GB | 1378 GB |
| Process time | 1081 CPU h | 95 CPU h | 614 CPU h | 1790 CPU h | |
| Wall clock time | 35h 26m | 3h 26m | 13h 29m | 48h 21m | |
| Peak memory | 119 GB | 18 GB | 128 GB |
GB, gigabyte; CPU, central processing unit; h, hours; m, minutes.