Table 4. 2019-nCoV 9-mer peptides with geometric mean ≥ 0.7 by 1G4 TCR positional weight matrix and predicted positive to bind HLA-A*02:01 by NetMHCpan 4.0 (Rank = NetMHCpan rank).
Peptide | Binding score | Activation score | Killing score | geoMean | Rank | Binder |
---|---|---|---|---|---|---|
RIMTWLDMV | 0.866377428 | 0.853995 | 0.776303 | 0.831249 | 0.3481 | SB |
ALNTLVKQL | 0.802453741 | 0.75073 | 0.785957 | 0.779413 | 0.6159 | WB |
LLLDRLNQL | 0.809895414 | 0.7752 | 0.741096 | 0.774888 | 0.0423 | SB |
MIAQYTSAL | 0.766262499 | 0.789511 | 0.749477 | 0.768242 | 0.9238 | WB |
VLSTFISAA | 0.799672451 | 0.756117 | 0.687278 | 0.746239 | 0.536 | WB |
NVLAWLYAA | 0.761297552 | 0.686117 | 0.739944 | 0.728423 | 1.4457 | WB |
RLANECAQV | 0.783161706 | 0.719705 | 0.680504 | 0.726572 | 0.2049 | SB |
KLLKSIAAT | 0.748896679 | 0.708996 | 0.697463 | 0.718118 | 1.0923 | WB |
QLSLPVLQV | 0.70128376 | 0.715259 | 0.708405 | 0.708293 | 0.4768 | SB |
VQMAPISAM | 0.729320768 | 0.698514 | 0.689612 | 0.705612 | 1.4677 | WB |
LLLTILTSL | 0.7131709 | 0.715194 | 0.680064 | 0.702623 | 0.2712 | SB |
SVLLFLAFV | 0.736972762 | 0.690855 | 0.679534 | 0.70202 | 1.1449 | WB |
LMWLIINLV | 0.727847374 | 0.681119 | 0.694007 | 0.700717 | 1.304 | WB |