Table 6.
Sequence percent similarity for the full-length genome (upper triangle) and the spike glycoprotein (lower triangle) alignmentsa.
| TCoV/VA-74 | TCoV/TX-GL | TCoV/IN-517 | TCoV/TX-1038 | TCoV/540 | TCoV/ATCC | TCoV/MG10 | IBV/Mass 41 | IBV/Ark | BuCoV | ThCoV | MuCoV | SW1 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TCoV/VA-74 | – | 95.5 | 95.1 | 95.7 | 93.7 | 92.8 | 97.0 | 86.6 | 89.3 | 48.3 | 49.3 | 47.9 | 51.2 |
| TCoV/TX-GL | 93.5 | – | 94.4 | 96.0 | 93.3 | 92.4 | 95.6 | 87.3 | 89.5 | 48.4 | 49.1 | 47.9 | 51.3 |
| TCoV/IN-517 | 97.2 | 93.9 | – | 94.6 | 96.2 | 93.4 | 95.8 | 87.0 | 88.8 | 48.3 | 49.2 | 47.9 | 51.3 |
| TCoV/TX-1038 | 98.0 | 93.9 | 95.8 | – | 93.5 | 93.0 | 95.3 | 87.1 | 90.4 | 48.3 | 49.1 | 47.9 | 51.2 |
| TCoV/540 | 94.4 | 92.8 | 95.0 | 94.5 | – | 92.8 | 94.1 | 86.5 | 87.8 | 48.2 | 49.0 | 47.8 | 51.1 |
| TCoV/ATCC | 92.4 | 91.0 | 92.6 | 92.3 | 92.4 | – | 92.9 | 86.9 | 88.1 | 48.1 | 49.0 | 47.7 | 51.1 |
| TCoV/MG10 | 99.9 | 93.5 | 97.2 | 98.0 | 94.4 | 92.4 | – | 86.8 | 88.3 | 48.4 | 49.2 | 47.9 | 51.4 |
| IBV/Mass41 | 34.9 | 34.9 | 35.1 | 34.9 | 35.5 | 35.6 | 34.9 | – | 91.3 | 48.0 | 48.8 | 47.6 | 50.8 |
| IBV/Ark | 35.2 | 35.2 | 35.6 | 35.1 | 35.7 | 35.7 | 35.2 | 86.8 | – | 47.9 | 48.7 | 47.4 | 50.8 |
| BuCoV | 28.5 | 28.9 | 28.4 | 28.7 | 28.2 | 28.8 | 28.5 | 27.7 | 28.0 | – | 75.3 | 71.2 | 45.5 |
| ThCoV | 26.6 | 26.9 | 26.7 | 26.4 | 26.4 | 26.5 | 26.6 | 26.8 | 26.6 | 47.2 | – | 70.4 | 46.3 |
| MuCoV | 28.8 | 28.9 | 28.9 | 28.6 | 28.8 | 29.0 | 28.8 | 27.7 | 27.9 | 48.4 | 48.4 | – | 45.0 |
| SW1 | 30.3 | 30.5 | 30.6 | 30.3 | 30.5 | 30.8 | 30.3 | 28.6 | 28.7 | 28.1 | 26.8 | 29.1 | – |
a
Alignments were assembled using ClustalW in the MegAlign program (DNASTAR, Inc.).