Table 2.
Structural proteins of CIV identified by LC-MS/MS with 1 peptide. The ORFs are ordered by the mass of the encoded proteins (column 3).
| ORF | NCBI Accession No | Molecular mass (kDa) | Peptide sequence | Protein coverage (% by amino acids) | MH+ | Delta m/z (ppm) | z | Xcorr |
|---|---|---|---|---|---|---|---|---|
| 317L | AAK82178 | 43.95 | IVNLIPQGQFQAK | 3.11 | 1455.832 | −0.30 | 2 | 1.77 |
| 130R | AAB94451 | 23.18 | ICFSEQPLLDDFSNK | 7.46 | 1812.847 | 1.04 | 2 | 2.86 |
| 307L | AAK82168 | 22.86 | LKPLGYLNSLQ | 5.58 | 1245.720 | 0.33 | 2 | 1.81 |
| 395R | AAK82255 | 17.28 | YAINNENQYR | 6.62 | 1284.597 | −0.72 | 2 | 2.54 |
| 010R | AAK81948 | 12.84 | TGSMVCSSTR | 8.33 | 1085.471 | 3.19 | 2 | 2.34 |
| 342R | AAK82203 | 9.33 | IQAQNYATMGIYN-QGSQIR* | 21.59 | 2156.055 | 2.74 | 2 | 3.73 |
| 227L | AAK82088 | 7.72 | TFAYEVPIRa | 14.30 | 1095.583 | 1.49 | 2 | 2.61 |
| 104L | AAB94434 | 7.05 | RVACSPR* | 12.30 | 845.441 | 2.01 | 2 | 2.78 |
a
The same peptide was measured multiple times in different gel slices.