Table 3.
Nucleotide sequences of intergenic regions (IGR) and transcriptional start and stop signals of ThkPV-1, ThkPV-2 and ThkPV-3 compared to those in TioV and MenPV.
| Virus | Start | Gene | Stop | IGR |
|
|---|---|---|---|---|---|
| Sequence | Size (nt) | ||||
| ThkPV-1 | AGGCCCGAAAGT | TTTAATAAAAAA | TAGGAATTATT...AAAGTGCAAGAT | 35 | |
| ThkPV-2 | GGGCCCGAAAGT | TTTTTAAGAAAAAA | CAAGGGT | 7 | |
| ThkPV-3 | GGGCCCGGAAGT | N | TTTAAGAAAAAA | CTATAGT | 7 |
| TioPV | GAGCCCAGAAGT | TTTTAAGAAAAAA | CAGAAATTAA…CAAAAGCCGGT | 41 | |
| MenPV | GAGCCCAGAAGT | TTTTAAAGAAAA | CTTAGAAAAAAGACAGAT | 18 | |
| ThkPV-1 | AGGCCCGAAC | TTTAAGAAAAAA | CAGAACAAT…ATAGAAAAAAC | 54 | |
| ThkPV-2 | GGGCCCGAAG | TTTAAGAAAAAA | TCAAAAT | 7 | |
| ThkPV-3 | AGGCCCGAAG | P/V | TTTAAGAAAAAA | CTAGGCT | 7 |
| TioPV | GAGCCCGAAT | TTTAAGAAAAAA | CTTAAAAT | 8 | |
| MenPV | GAGCCCGAAC | TTTAAGAAAAAA | TAAGT | 5 | |
| ThkPV-1 | AGGCCCGAAT | TTTAATAAAAAA | TTCCCTTACAT…CCAACAAC | 119 | |
| ThkPV-2 | GGGTCCGAAC | TTTAAGAAAAAA | CTAATATTAT…CAGGAACATT | 59 | |
| ThkPV-3 | GGGGTCGAAC | M | TTTAAGAAAAAA | CTGCAAA...TGAAAGAC | 36 |
| TioPV | GGGTCCGAAC | TTTTAATAAAAAA | CTAAGGGGTA...CCATGGCTA | 35 | |
| MenPV | GAGCCCGAAC | TTTAATAAAAAA | TTAGAGAGGT...ACCGGAAAG | 38 | |
| ThkPV-1 | AGGCCCGAAC | TTTATTCAAAA | CACACTATATTG…GAGCATGTT | 47 | |
| ThkPV-2 | GGGCCCGAAC | TTTTAATAAAAAA | CCTAGTGGACTGGAAGCCT | 19 | |
| ThkPV-3 | GGGGGCGAAC | F | TTTTTAATAAAAAA | CTTGACAT…AGCCCTACCC | 22 |
| TioPV | GAGCCCGAAC | TTTAAGGAAAA | CTAGGCATAT...AACAGCGCTTG | 55 | |
| MenPV | GAGCACGAAC | TTCAAGAAAAAA | CAAATATGAGC…GCAGTGAAGT | 85 | |
| ThkPV-1 | AGGCCCGAAT | TTTTAATAAAAAAA | TGATAATTG…AATGCCATCAT | 124 | |
| ThkPV-2 | GGGCCCGACC | TTTAAGAAAAAA | CTGAATT | 7 | |
| ThkPV-3 | GGGCCCGACC | HN | TTTAAGAAAAA | CAAT | 4 |
| TioPV | GAGCCCGACT | TTTAAGAAAAAA | CTAAAGGGGA...CAAGTCCAAGT | 70 | |
| MenPV | GAGCCCGAAT | TTTAAGAAAAAA | GAAAATCAAG...GAGAAAAAGGT | 68 | |
| ThkPV-1 | GGGCCAGAAT | TTAAGAAAAAA | CAATGCTTATTTA… 5' trailer sequence | ||
| ThkPV-2 | GGGCCAGAAT | TTTTAAGAAAAAA | CCCATTTAGATTTT… 5' trailer sequence | ||
| ThkPV-3 | GGGCCAGAAT | L | TTTAAGAAAAAA | TTATTGATTTTCCCC…5' trailer sequence | |
| TioPV | GGGCCAGAAT | TTTAAGAAAAAAA | CCTATATTGA…5' trailer sequence | ||
| MenPV | GGGCCAGAAT | TTTTTTAAGAAAAA | CATTAAAATTTT…5' trailer sequence | ||