Table 4.
Nucleotide and amino acid sequence identity between South Polar skua adenovirus 1 and other representative adenoviruses.
| Genus | Virus straina | % identityb |
|||||||
|---|---|---|---|---|---|---|---|---|---|
| Polymerase |
Penton base |
Hexon |
Fiber |
||||||
| nt | aa | nt | aa | nt | aa | nt | aa | ||
| Siadenovirus | THEV | 68.3 | 65.6 | 75.4 | 74.7 | 74.9 | 75.4 | 48.0 | 29.1 |
| HEV | 68.3 | 65.6 | 75.4 | 74.7 | 74.9 | 75.4 | 48.0 | 29.1 | |
| TAdV A | 68.3 | 65.6 | 75.4 | 74.7 | 74.9 | 75.4 | 48.0 | 29.1 | |
| RAdV 1 | 73.8 | 73.4 | 79.2 | 82.4 | 77.5 | 85.3 | 57.2 | 43.8 | |
| FrAdV 1 | 59.5 | 51.1 | 66.4 | 64.0 | 66.2 | 69.0 | 47.1 | 29.7 | |
| GTAdV 1 | 68.0 | 77.5 | 72.7 | 71.2 | 61.7 | 55.8 | n.d | n.d | |
| PsAdV | 66.9 | 68.5 | n.d | n.d | 40.7 | 36.4 | n.d | n.d | |
| STAdV 1 | 60.7 | 56.7 | n.d | n.d | n.d | n.d | n.d | n.d | |
| Aviadenovirus | FaAdV | n.d | n.d | 52.5 | 47.3 | 53.3 | 53.0 | n.d | n.d |
| FAdV 1 | 44.5 | 37.9 | 49.0 | 51.0 | 50.6 | 53.1 | 23.7 | 14.8 | |
| Atadenovirus | DAdV 1 | 51.3 | 40.6 | 57.2 | 54.4 | 57.2 | 53.2 | 30.6 | 17.0 |
| SnAdV 1 | 47.4 | 37.4 | 54.7 | 54.3 | 52.8 | 53.8 | 29.2 | 13.4 | |
| OAdV 7 | 54.6 | 40.9 | 60.1 | 53.5 | 60.5 | 54.4 | 30.8 | 15.3 | |
| Mastadenovirus | BAdV 3 | 48.4 | 41.0 | 50.6 | 50.9 | 50.3 | 51.2 | 29.1 | 16.0 |
| CAdV 2 | 47.9 | 40.3 | 49.6 | 48.2 | 52.1 | 52.2 | 28.0 | 16.7 | |
| MAdV A | 49.6 | 39.7 | 45.5 | 47.7 | 52.5 | 50.2 | 29.2 | 14.8 | |
| PAdV A | 41.8 | 36.1 | 50.7 | 48.5 | 47.2 | 50.7 | 28.2 | 18.7 | |
| TsAdV | 48.2 | 39.8 | 52.0 | 49.8 | 50.2 | 53.1 | 35.2 | 19.6 | |
| HAdV 1 | 43.9 | 38.1 | 46.9 | 48.9 | 50.8 | 50.9 | 30.9 | 15.9 | |
| HAdV 3 | 45.5 | 39.6 | 50.5 | 51.0 | 52.2 | 50.6 | 33.4 | 17.5 | |
| HAdV 4 | 45.1 | 42.0 | 46.4 | 50.8 | 48.7 | 51.1 | 30.7 | 17.7 | |
| HAdV 8 | 43.9 | 38.9 | 46.9 | 49.9 | 48.9 | 49.8 | 31.9 | 17.3 | |
| HAdV 12 | 47.8 | 40.8 | 53.0 | 49.7 | 52.3 | 50.3 | 30.5 | 16.0 | |
| HAdV 40 | 44.7 | 38.9 | 39.7 | 50.7 | 51.1 | 50.5 | 29.1 | 19.5 | |
| SAdV 21 | 45.4 | 39.5 | 49.8 | 50.3 | 51.6 | 50.7 | 31.5 | 16.5 | |
Virus strains and GenBank numbers; avirulent turkey hemorrhagic enteritis virus (THEV, AY849321), hemorrhagic enteritis virus (HEV, AF074946), turkey adenovirus A (TAdV-A, AC000016), frog adenovirus (FrAdV-1, AF224336), raptor adenovirus 1 (RAdV-1, EU715130), Sulawesi tortoise adenovirus (STAdV-1, EU056826), Great tit adenovirus (GTAdV, FJ849795), Psittacine adenovirus (PsAdV, pol, EU056825; hexon, EU627198), fowl adenovirus (FAdV-1, U46933), falcon adenovirus (FaAdV, AY683541), duck adenovirus 1 (DAdV-1, Y09598), snake adenovirus (SnAdV-1, DQ106414), Ovine adenovirus 7 (OAdV-7, OAU40839), bovine adenovirus 3 (BAdV-3, AF030154), Canine adenovirus 2 (CAdV-2, AC000020), porcine adenovirus A (PAdV-A, NC_005869), tree shrew adenovirus (TsAdV, NC_004453), murine adenovirus A (MAdV-A, AC000012), human adenovirus 1 (HAdV-1, AC000017), human adenovirus 3 (HAdV-3, DQ086466), human adenovirus 4 (HAdV-4, AY458656), human adenovirus 8 (HAdV-8, AB448769), human adenovirus 12 (HAdV-12, X73487), human adenovirus 40 (HAdV-40, NC_001454) and simian adenovirus 21 (SAdV-21, AC000010). Only partial nucleotide sequence of polymerase gene from PsAdV (269-bps) and STAdV (272-bps), and nucleotide sequence of hexon from GTAdV (2703-bps), PsAdV (587-bps) and FaAdV (sss-bps) were available.
nt; nucleotide, aa; amino acid, n.d: not done.