Table 1.
Taxonomy of bats, UTM coordinates and prevalence of coronaviruses genera and species per locality and host species.
| Family | Genus | Species | Zone | UTM X | UTM Y | Locality | CoV Genus & species | Count | Pos. | Pos. per locality (%) | Pos. per species (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Miniopteridae | Miniopterus | schreibersii | 31 T | 483 | 491 | LF1, Laissac, Aveyron, France | α, EPI 8 | 12 | 1 | 8.33% | 9.52% |
| 31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 604 | 486 | LF3, Dions, Gard, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 418 | 461 | LS1, Sant Llorenç Savall, Spain | α, EPI 7 | 9 | 1 | 11.11% | – | |||
| 31 T | 402 | 457 | LS2, Olesa de Bonesvalls, Spain | 1 | 0 | 0.00% | – | ||||
| 31 S | 497 | 439 | LS3, Inca, Majorque, Spain | α, EPI 3 | 6 | 1 | 16.67% | – | |||
| 31 T | 477 | 461 | LS4, Malgrat de Mar, Spain | 8 | 0 | 0.00% | – | ||||
| 31 T | 312 | 474 | LS5, Lés, Spain | 2 | 0 | 0.00% | – | ||||
| 31 T | 310 | 463 | LS6, Os de Balaguer, Spain | α, EPI 9 | 1 | 1 | 100.00% | – | |||
| 31 T | 464 | 438 | LS8, Palma, Majorque, Spain | 1 | 0 | 0.00% | – | ||||
| Miniopterus | maghrebensis | 29 R | 736 | 352 | LM1, Ifri'N Caid, Morocco | 7 | 0 | 0.00% | 0.00% | ||
| Molossidae | Tadarida | teniotis | 30 T | 698 | 454 | LS9, San Pedro, Oliete, Spain | αb | 8 | 1 | 12.50% | 12.50% |
| Rhinolophidae |
Rhinolophus |
euryale |
29 R |
736 |
352 |
LM1, Ifri'N Caid, Morocco |
α, EPI 10 |
3 |
1 |
33.33% |
33.33% |
| Rhinolophus | ferrumequinum | 31 T | 483 | 491 | LF1, Laissac, Aveyron, France | 7 | 0 | 0.00% | 14.64% | ||
| 31 T | 502 | 496 | LF4, Lapanouse, Aveyron, France | 2 | 0 | 0.00% | – | ||||
| 31 T | 488 | 496 | LF6, Cantoin, Aveyron, France | | β, E PI 1 α, EPI 6 | 161 | 61 | 37.89% | – | |||
| 30 T | 568 | 525 | LF5, Pontchâteau, Loire-Atlantique, France | 2 | 0 | 0.00% | – | ||||
| 31 T | 463 | 470 | LF7, Batère, Pyrénées-Orientales, France | α, EPI 4 | 3 | 1 | 33.33% | – | |||
| 30 T | 547 | 528 | LF8, Pluherlin, Morbihan, Bretagne, France | 2 | 0 | 0.00% | – | ||||
| 30 T | 397 | 530 | LF9, Plovan, Finistère, Bretagne, France | | β, EPI 1 α, EPI 6 | 705 | 90 | 12.77% | – | |||
| 29 R | 736 | 352 | LM1, Ifri'N Caid, Morocco | 2 | 0 | 0.00% | – | ||||
| 31 S | 497 | 439 | LS3, Inca, Majorque, Spain | 4 | 0 | 0.00% | – | ||||
| 31 T | 411 | 461 | LS7, Rocafort, Spain | β, EPI 1 | 48 | 8 | 16.67% | – | |||
| 31 S | 582 | 442 | LS10, Ferreries, Minorque, Spain | 2 | 0 | 0.00% | – | ||||
| 31 S |
492 |
436 |
LS11, Llucmajor, Majorque, Spain |
α, EPI 7 |
1 |
1 |
100.00% |
– |
|||
| Rhinolophus | hipposideros | 31 T | 483 | 491 | LF1, Laissac, Aveyron, France | 8 | 0 | 0.00% | 0.00% | ||
| 31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 502 | 496 | LF4, Lapanouse, Aveyron, France | 3 | 0 | 0.00% | – | ||||
| Vespertilionidae |
Barbastella |
barbastellus |
30 T |
547 |
528 |
LF10, Pluherlin, Morbihan, Bretagne, France |
1 |
0 |
0.00% |
0.00% |
|
| Eptesicus | serotinus | 31 T | 604 | 486 | LF3, Dions, Gard, France | NA | 2 | 1 | 50.00% | 20.00% | |
| 31 T | 490 | 495 | LF11, Lacalm, Aveyron, France | 2 | 0 | 0.00% | – | ||||
| 31 T |
316 |
471 |
LS16, Senet, Spain |
1 |
0 |
0.00% |
– |
||||
| Eptesicus | isabellinus | 32 S | 599 | 402 | LT1, Zaghouan, Tunisia | 2 | 0 | 0.00% | 0.00% | ||
| Hypsugo | savii | 30 T | 698 | 454 | LS9, Oliete, Spain | 1 | 0 | 0.00% | 0.00% | ||
| Myotis | alcathoe | 31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | 1 | 0 | 0.00% | 0.00% | ||
| 31 T |
463 |
470 |
LF7, Batère, Pyrénées-Orientales, France |
1 |
0 |
0.00% |
– |
||||
| Myotis | bechsteinii | 31 T | 483 | 491 | LF1, Laissac, Aveyron, France | 2 | 0 | 0.00% | 0.00% | ||
| 30 T | 568 | 525 | LF5, Pontchâteau, Loire-Atlantique, France | 9 | 0 | 0.00% | – | ||||
| Myotis | blythii | 31 T | 463 | 470 | LF7, Batère, Pyrénées-Orientales, France | 2 | 0 | 0.00% | 0.00% | ||
| 31 T | 504 | 488 | LF13, Creissels, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 312 | 474 | LS5, Lés, Spain | 4 | 0 | 0.00% | – | ||||
| 31 T | 310 | 463 | LS6, Os de Balaguer, Spain | 1 | 0 | 0.00% | – | ||||
| Myotis | capaccinii | 31 T | 604 | 486 | LF3, Dions, Gard, France | 6 | 0 | 0.00% | 46.67% | ||
| 31 T | 488 | 496 | LF6, Cantoin, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 31 S | 492 | 436 | LS11, Llucmajor, Majorque, Spain | | α, EPI 3 α, EPI 5 | 6 | 6 | 100.00% | – | |||
| 31 T | 402 | 457 | LS2, Olesa de Bonesvalls, Spain | 1 | 0 | 0.00% | – | ||||
| 31 T | 325 | 465 | LS12, Llimiana, Spain | α, EPI 3 | 1 | 1 | 100.00% | – | |||
| Myotis | daubentonii | 31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | α, EPI 4 | 6 | 2 | 33.33% | 9.09% | |
| 31 T | 604 | 486 | LF3, Dions, Gard, France | 4 | 0 | 0.00% | – | ||||
| 30 T | 568 | 525 | LF5, Pontchâteau, Loire-Atlantique, France | α, EPI 4 | 20 | 1 | 5.00% | – | |||
| 31 T | 490 | 492 | LF12, Cruéjouls, Auvergne, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 312 | 474 | LS5, Lés, Spain | 2 | 0 | 0.00% | – | ||||
| Myotis | emarginatus | 31 T | 483 | 491 | LF1, Laissac, Aveyron, France | 7 | 0 | 0.00% | 0.00% | ||
| 31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | 4 | 0 | 0.00% | – | ||||
| 30 T | 568 | 525 | LF5, Pontchâteau, Loire-Atlantique, France | 5 | 0 | 0.00% | – | ||||
| 30 T | 547 | 528 | LF10, Pluherlin, Morbihan, Bretagne, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 484 | 495 | LF14, Brénac, Aveyron, France | 2 | 0 | 0.00% | – | ||||
| Myotis | escalerai | 31 S | 497 | 439 | LS3, Inca, Majorque, Spain | 8 | 0 | 0.00% | 0.00% | ||
| 31 T | 378 | 459 | LS13, Orpi, Spain | 2 | 0 | 0.00% | – | ||||
| 31 T | 463 | 470 | LF7, Batère, Pyrénées-Orientales, France | 3 | 0 | 0.00% | – | ||||
| 31 T | 375 | 459 | LS14, Santa Maria de Miralles, Vilafranca, Spain | 2 | 0 | 0.00% | – | ||||
| Myotis | myotis | 31 T | 604 | 486 | LF3, Dions, Gard, France | 3 | 0 | 0.00% | 11.79% | ||
| 31 S | 497 | 439 | LS3, Inca, Majorque, Spain | NA | 88 | 8 | 9.09% | – | |||
| 31 T | 477 | 461 | LS4, Malgrat de Mar, Spain | α, EPI 3 | 7 | 4 | 57.14% | ||||
| 31 T | 312 | 474 | LS5, Lés, Spain | α, EPI 5 | 1 | 1 | 100.00% | – | |||
| 30 T | 568 | 525 | LF5, Pontchâteau, Loire-Atlantique, France | 18 | 0 | 0.00% | – | ||||
| 31 T | 310 | 463 | LS6, Os de Balaguer, Spain | | α, EPI 2 α, EPI 9 | 2 | 2 | 100.00% | – | |||
| 31 T | 504 | 488 | LF13, Creissels, Aveyron, France | 3 | 0 | 0.00% | – | ||||
| 30 T | 552 | 526 | LF15, La Roche Bernard, Morbihan, France | 17 | 0 | 0.00% | – | ||||
| 31 S | 492 | 436 | LS11, Llucmajor, Majorque, Spain | | α, EPI 5 α, EPI 7 | 89 | 12 | 13.48% | – | |||
| 31 T |
325 |
465 |
LS12, Llimiana, Spain |
1 |
0 |
0.00% |
– |
||||
| Myotis | mystacinus | 30 T | 568 | 525 | LF5, Pontchâteau, Loire-Atlantique, France | 3 | 0 | 0.00% | 0.00% | ||
| 31 T |
484 |
495 |
LF14, Brénac, Aveyron, France |
1 |
0 |
0.00% |
|||||
| Myotis | nattereri | 30 T | 568 | 525 | LF5, Pontchâteau, Bretagne, France | α, EPI 4 | 34 | 3 | 8.82% | 8.82% | |
| Myotis | nattereri_ssp.aa | 31 T | 483 | 491 | LF1, Laissac, Aveyron, France | 5 | 0 | 0.00% | 0.00% | ||
| 31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | 2 | 0 | 0.00% | – | ||||
| 31 T | 502 | 496 | LF4, Lapanouse, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 31 T | 490 | 492 | LF12, Cruéjouls, Auvergne, France | 2 | 0 | 0.00% | – | ||||
| 31 T |
481 |
492 |
LF16, Biounac, Aveyron, France |
1 |
0 |
0.00% |
– |
||||
| Myotis | punicus | 29 R | 736 | 352 | LM1, Ifri'N Caid, Morocco | 3 | 0 | 0.00% | 27.27% | ||
| 32 S | 599 | 402 | LT1, Zaghouan, Tunisie | α, EPI 9 | 1 | 1 | 100.00% | 37.50% | |||
| 32 S |
602 |
402 |
LT2, Zaghouan, Tunisie |
α, EPI 9 |
7 |
2 |
28.57% |
– |
|||
| Nyctalus | leisleri | 31 T | 418 | 461 | LS15, Sant Llorenç Savall, Spain | 1 | 0 | 0.00% | 0.00% | ||
| 31 T | 316 | 471 | LS16, Senet, Spain | 3 | 0 | 0.00% | – | ||||
| Pipistrellus | kuhlii | 30 T | 698 | 454 | LS9, Oliete, Spain | 3 | 0 | 0.00% | 0.00% | ||
| Pipistrellus | pipistrellus | 31 T | 604 | 486 | LF3, Dions, Gard, France | 2 | 0 | 0.00% | 0.00% | ||
| 31 T | 484 | 495 | LF14, Brénac, Aveyron, France | 9 | 0 | 0.00% | – | ||||
| 31 T | 481 | 492 | LF16, Biounac, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 30 T | 416 | 531 | LF17, Quimper, Finistère, Bretagne, France | 3 | 0 | 0.00% | – | ||||
| 31 T | 480 | 496 | LF18, Orlhaguet, Aveyron, France | 6 | 0 | 0.00% | – | ||||
| 31 T | 480 | 496 | LF19, Ste-Genevière/Argence, Aveyron, France | 1 | 0 | 0.00% | – | ||||
| 30 T |
698 |
454 |
LS9, Oliete, Spain |
1 |
0 |
0.00% |
– |
||||
| Pipistrellus | pygmaeus | 31 T | 484 | 495 | LF14, Brénac, Aveyron, France | 1 | 0 | 0.00% | – | ||
| Plecotus | austriacus | 31 T | 604 | 486 | LF3, Dions, Gard, France | 1 | 0 | 0.00% | 0.00% | ||
| 30 T | 698 | 454 | LS9, Oliete, Spain | 2 | 0 | 0.00% | – | ||||
| SUB TOTAL (unambiguous specimen) | 1446 | 211 | 14.59% | NA | |||||||
| Uncertain determination (pools in mixed species roots) |
Rhinolophus Myotis |
ferrumequinum emarginatus |
31 T |
488 |
496 |
LF6, Cantoin, Aveyron, France |
α, EPI 6 |
74 |
1 |
1.35% |
NA |
|
Rhinolophus |
ferrumequinum hipposideros |
31 T | 465 | 492 | LF2, Lagarde, Aveyron, France | 1 | 0 | 0.00% | NA | ||
| Myotis | emarginatus nattereri_ssp.a daubentoni | ||||||||||
| Miniopterus | schreibersi | ||||||||||
| Miniopterus Rhinolophus | schreibersii ferrumequinum | 31 S | 582 | 442 | LS10, Ferreries, Minorque, Spain | 2 | 0 | 0.00% | NA | ||
| Plecotus Pipistrellus Miniopterus Eptesicus Myotis myotis Myotis | austriacus pipistrellus schreibersii serotinus myotis capaccini daubentoni | 31 T | 604 | 486 | LF3, Dions, Gard, France | 1 | 0 | 0.00% | NA | ||
| Pipistrellus Miniopterus Myotis | pipistrellus schreibersii myotis | 31 T | 477 | 461 | LS4, Malgrat de Mar, Spain | α, EPI 3 | 27 | 1 | 3.70% | NA | |
| GRAN TOTAL (including pools) | 1551 | 212 | 13.67% | NA | |||||||
Samples are divided in two categories, those for which the host species has been unambiguously determined and confirmed by genetics, and those for which the confirmation was not possible (pooled sampling). Positives are bolded.
NA: Not Applicable; ND: Not Determined.
a
nattereri_sp.a* refers to a cryptic lineage, a putative new species yet not formally described.
b
Sequencing of this coronavirus nsp12 gene didn’t provide signal of sufficient quality to characterize the species.