Table 2. Genetic differences between TEN Bosnia A and Iraq B genomes.
| TEN Iraq B (CP032303.1) coordinate | Nucleotide in TEN Iraq B | Nucleotide in TEN Bosnia A | Gene | Gene coordinates | Protein | Amino acid replacement(Iraq B/Bosnia A) |
|---|---|---|---|---|---|---|
| 18409 | G | A | TP0017 | 1 | hypothetical protein | M/M |
| 18413 | T | C | 5 | V/A | ||
| 80362 | T | C | TP0073 | 260 | HDOD domain protein | K/R |
| 135228 | G | T | TP0117 | 1451 | TprC | P/E* |
| 135229 | G | C | 1450 | P/E* | ||
| 135246 | C | T | 1433 | R/K | ||
| 136528 | C | T | 151 | E/K | ||
| 136542 | C | T | 137 | R/H | ||
| 188037 | G | T | TP0165 | 477 | TroC | L/L |
| 203271 | G | A | TP0186 | 368 | HemN | G/E |
| 230525 | C | A | TP0225 | 241 | hypothetical protein | P/T |
| 320541 | A | G | TP0304 | 1580 | hypothetical protein | M/T |
| 330101 | G | A | TP0313 | 1042 | TprE | V/I |
| 333269 | C | T | TP0316 | 801 | TprG | G/G |
| 372199 | T | C | IGR TP0347-8** | - | - | - |
| 450049 | G | A | TP0422 | 769 | hypothetical protein | A/T |
| 468671 | C | T | TP0442 | 1298 | RecN | A/V |
| 497702 | G | A | TP0470 | 75 | hypothetical protein | L/L |
| 512065 | G | C | TP0483 | 1187 | hypothetical protein | S/W |
| 521209 | A | G | TP0488 | 819 | Mcp2-1 | R/R |
| 521388 | T | C | 998 | F/S | ||
| 534764 | G | A | TP0500 | 952 | penicillin-binding protein | A/T |
| 566812 | T | G | TP0524 | 5 | S16 family endopeptidase La | E/A |
| 592250 | C | T | TP0548 | 1043 | FadL-like protein*** | P/L |
| 643057 | G | A | TP0592 | 744 | hypothetical protein | M/I |
| 690733 | G | A | TP0632 | 929 | TprS | R/H |
| 702522 | G | C | TP0641a | 94 | hypothetical protein | L/V |
| 725892 | A | G | TP0664 | 46 | FlaA | T/A |
| 728789 | A | C | TP0667 | 546 | bifunctional phosphoribulokinase/uridine kinase | H/Q |
| 882333 | A | G | TP0814 | 69 | TrxB | A/A |
| 942845 | G | A | TP0864 | 67 | hypothetical protein | L/L |
| 993147 | T | G | TP0915 | 1030 | hypothetical protein | F/V |
| 994934 | T | C | TP0917 | 1320 | MgtE | F/F |
| 1032779 | C | T**** | TP0952 | 620 | putative lipase/esterase | G/E |
| 1085945 | T | C | TP0999 | 261 | FtsK | A/A |
| 1089703 | C | T | TP1001 | 552 | hypothetical protein | A/A |
| 1130225 | A | G | TP1035 | 731 | ValS | L/P |
Listed are 37 single nucleotide variants. Differences in the number of repetitive sequences and differences in homopolymeric regions are not listed. The hypervariable tprK (TP0897) gene was excluded from the analysis.
*P/E replacement is a result of two adjacent nucleotide changes.
**IGR, intergenic region.
***Protein predictions by Radolf and Kumar [30].
****A region comprising 7 T nucleotides.