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. 2019 Aug 20;105:35–71. doi: 10.1016/bs.aivir.2019.07.009

Table 1.

Examples of enveloped virion structures and their membrane associated components determined by different cryogenic electron microscopy data processing strategies.

Virus Component Method and stepsa Resolution (Å) Accession codes Reference
Simian immunodeficiency virus 1 (Retroviridae) Capsomer (Env) 3D
1-2-4
28 EMD-1216
PDB:2BF1
Zanetti et al. (2006)
Zika virus (Flaviviridae) Virion 2D
1-2
3.1 EMD-7543
PDB:6CO8
Sevvana et al. (2018)
Sindbis virus (Togaviridae) Virion 2D
1-2-3-4-5
3.5 EMD-9693
PDB:6IMM
Chen et al. (2018)
Rift Valley fever virus (Phenuiviridae) Capsomer (Gn–Gc) 2D
1-2-3-4
7.7 EMD-4201 PDB:6F9F Halldorsson et al. (2018)
Hantaan virus (Hantaviridae) Capsomer (Gn–Gc) 2D
1-2′-4
25 N/A Battisti et al. (2011)
Tula virus (Hantaviridae) Capsomer (Gn–Gc) 3D
1-2-4
16 EMD-3364 Li et al. (2016a)
Bunyamwera virus (Orthobunyaviridae) Capsomer (Gn–Gc) 3D
1-2-4
30 EMD-2352 Bowden et al. (2013)
Hazara virus (Nairoviridae) Capsomer (Gn–Gc) 3D
1-2-4
25 N/A Punch et al. (2018)
Lassa virus (Arenaviridae) Capsomer (GP1–GP2) 3D
1-2-4
14.0 EMD-3290 Li et al. (2016b)
Measles virus (Paramyxoviridae) Virion 3D
1
N/A N/A Ke et al. (2018b)
Ebola virus (Filoviridae) Capsomer (GP) 2D
1-2
11 EMD-8036 Beniac and Booth (2017)
Influenza virus A (Orthomyxoviridae) Virion 3D
1
N/A N/A Calder et al. (2010)
Haloarcula hispanica SH1 virus (Sphaerolipoviridae) Virion 2D
1-2-3-4-5
3.8 EMD-4633
PDB:6QT9
Colibus et al. (2019)
a

The steps refer to different parts of the various image processing workflows in Fig. 2. For steps in 2D workflows (single particle averaging and subparticle averaging), refer to Fig. 2A. For steps in 3D workflows (tomography and subtomogram averaging), refer to Fig. 2B.