Table 2. Top genes from MIP.

Top 9 immune genes that are significantly increased in patients with good DSS after Benjamini-Hochberg correction and correlation of these genes with qmIF data for stromal density of CD3, CD3+CD8+, and CD68+ as well as ratio of CD8/CD68. Values in bold are different from 0 with a significance level alpha=0.05 using Benjamini-Hochberg correction.

	Differential expression		Correlation with Density
Gene	Fold Change	BH p value	CD8/CD68 Stroma	CD3+CD8+ Stroma	CD68+ Stroma	CD3+ Stroma
PTPRC	1.07	0.0399	0.05	0.17	0.12	0.3
CCL5	1.19	0.0399	0.21	0.36	0.03	0.41
CD2	1.05	0.0399	0.07	0.24	0.14	0.36
CD27	1.21	0.04	0.04	0.2	0.16	0.31
CXCL9	1.56	0.0459	0.19	0.33	0.04	0.45
CD8A	1.26	0.0459	0.16	0.35	0.11	0.39
CXCR3	1.11	0.0459	0.19	0.36	0.06	0.4
CXCL11	1.39	0.0459	0.2	0.38	0.05	0.42
LCK	1.14	0.0459	−0.03	0.12	0.21	0.24