Table 1.
Oligonucleotides used for the detection of GLRaV-1, GLRaV-2, GLRaV-3, GLRaV-4, GLRaV-7, GLRaV-9, ArMV, GVA, GVB, GFLV and GRSPaV by RT-PCR.
| Virus | Primer name | Primer sequence | Fragment size (bp) | References |
|---|---|---|---|---|
| GLRaV-1 | LR1CPF1 | CTAGCGTTATATCTCAAAATGA | 502 | This study |
| LR1CPR1 |
CCCATCACTTCAGCACATAAA |
|||
| GLRaV-2 | LR2 12474U | TTGACAGCAGCCGATTAAGCG | 333 | (Nakaune and Nakano, 2006) |
| LR2 12806D |
CTGACATTATTGGTGCGACGG |
|||
| GLRaV-2 | LR2 V2dCPf2 | ACGGTGTGCTATAGTGCGTG | 497 | (Bertazzon and Angelini, 2004) |
| LR2 V2CPr1 |
GCAGCTAAGTACGAATCTTC |
|||
| GLRaV-3 | LR3 LC1F | CGCTAGGGCTGTGGAAGTATT | 546 | (Turturo et al., 2005) |
| LR3 LC2R |
GTTGTCCCGGGTACCAGATAT |
|||
| GLRaV-4 | LR4 HSPV-F | ACATTCTCCACCTTGTGCTTTT | 321 | (Osman et al., 2007) |
| LR4 HSPC-R |
CATACAAGCGAGTGCAATTACA |
|||
| GLRaV-7 | LR7 F | TATATCCCAACGGAGATGGC | 502 | (Engel et al., 2008a) |
| LR7 R |
ATGTTCCTCCACCAAAATCG |
|||
| GLRaV-9 | LR9 F | CGGCATAAGAAAAGATGGCAC | 393 | (Alkowni et al., 2004) |
| LR9 R |
TCATTCACCACTGCTTGAAC |
|||
| ArMV | ArMVfor | TGACAACATGGTATGAAGCACA | 402 | (Gambino and Gribaudo, 2006) |
| ArMVrev |
TATAGGGCCTTTCATCACGAAT |
|||
| GFLV | FL C3310 | GATGGTAACGCTCCCGCTGCTCTT | 312 | (MacKenzie et al., 1997) |
| FL H2999 |
TCGGGTGAGACTGCGCAACTTCCTA |
|||
| GVA | GVA 6540U | TTTGGGTACATCGCGTTGGT | 341 | (Nakaune and Nakano, 2006) |
| GVA 6880D |
TCTAAGCCCGACGCGAAGT |
|||
| GVA | GVA H587 | GACAAATGGCACACTACG | 429 | (Minafra and Hadidi, 1994) |
| GVA C995 |
AAGCCTGACCTAGTCATCTTGG |
|||
| GVB | GVB C410 | GTGCTAAGAACGTCTTCACAGC | 460 | (Minafra and Hadidi, 1994) |
| GVB H28 |
ATCAGCAAACACGCTTGAACCG |
|||
| GRSPaV | RSP UP1 | TGAGATGGTYGCTAATATCG | 242 | (Nakaune and Nakano, 2006) |
| RSP DO2 | CTATTAGTACGGTATTCCAG |