Table 1.
HIV-1 genotype data for 57 infected individuals from eastern Cameroon and the results of HIV-1 RT-LAMP.
| Sample ID | Genetic subtypea |
LAMP |
||||
|---|---|---|---|---|---|---|
| gag | pol | env-C2V3 | gp41 | Ttb | EP | |
| 01CM2213 | CRF_01.AE | nac | CRF_01.AEA | na | 19.2d | Pe |
| 01CF2214 | G | U | U | na | 25.8 | P |
| 01CM2215 | CRF_02.AG | na | CRF_02.AG | na | 28.7 | P |
| 01CM2216 | A | na | A | na | 21.2 | P |
| 01CM2217 | CRF_11.cpx | na | CRF_11.cpx | na | 26.5 | P |
| 01CM2218 | CRF_11.cpx | CRF_11.cpx | nd | U | 31.0 | P |
| 01CM2219 | CRF_11.cpx | na | CRF_02.AG | na | No Tt | P |
| 01CM2220 | CRF_02.AG | na | A | na | 29.2 | P |
| 01CM2222 | CRF_02.AG | na | CRF_02.AG | na | 29.2 | P |
| 01CM2223 | CRF_01.AE | na | CRF_02.AG | na | 26.2 | P |
| 01CM2224 | CRF_02.AG | na | CRF_02.AG | na | 28.8 | P |
| 01CM2225 | B | na | A | na | 24.3 | P |
| 01CM2226 | CRF_02.AG | na | CRF_02.AG | na | 26.4 | P |
| 01CM2227 | CRF_02.AG | na | CRF_02.AG | na | 27.2 | P |
| 01CM2228 | CRF_02.AG | na | CRF_02.AG | na | 30.9 | P |
| 01CM2229 | CRF_11.cpx | na | CRF_11.cpx | na | 27.0 | P |
| 01CM2230 | A | na | A | na | 22.7 | P |
| 01CM2231 | CRF_02.AG | na | A | na | 23.4 | P |
| 01CM2232 | B | U | A | U | No Tt | P |
| 01CM2234 | CRF_11.cpx | na | CRF_02.AG | na | 26.0 | P |
| 01CM2235 | B | U | nd | U | 21.9 | P |
| 01CM2236 | CRF_02.AG | na | CRF_02.AG | na | 25.2 | P |
| 01CM2237 | F2 | na | F2 | na | 25.1 | P |
| 01CM2238 | CRF_13.cpx | na | CRF_01.AE | na | 22.2 | P |
| 01CM2239 | CRF_13.cpx | na | CRF_11.cpx | na | 26.2 | P |
| 01CM2240 | CRF_02.AG | na | CRF_13.cpx | na | 29.6 | P |
| 01CM2241 | CRF_01.AE | CRF_11cpx | nd | U | 27.5 | P |
| 01CM2242 | CRF_02.AG | na | CRF_02.AG | na | 24.8 | P |
| 01CM2243 | CRF_11.cpx | CRF_11cpx | nd | CRF_11.cpx | 24.7 | P |
| 01CM2244 | CRF_01.AE | na | CRF_11.cpx | na | 23.1 | P |
| 01CM2246 | B | na | CRF_01.AE | na | 23.6 | P |
| 01CF2247 | CRF_11.cpx | na | CRF_01.AE | na | 24.1 | P |
| 01CM2248 | CRF_01.AE | na | A | na | 21.9 | P |
| 01CM2249 | A | na | A | na | 23.6 | P |
| 01CM2250 | CRF_02.AG | CRF_02.AG | nd | U | 30.5 | P |
| 01CM2252 | CRF_02.AG | U | nd | U | 28.6 | P |
| 01CM2253 | CRF_01.AE | U | nd | A | 21.7 | P |
| 01CM2256 | CRF_01.AE | na | A | na | 21.6 | P |
| 01CM2257 | CRF_01.AE | na | A | na | 21.9 | P |
| 01CM2260 | CRF_13.cpx | U | A | CRF_13.cpx | 23.7 | P |
| 01CM2262 | B | na | CRF_02.AG | na | 27.8 | P |
| 01CF2268 | CRF_02.AG | CRF_02.AG | nd | CRF_02.AG | 32.5 | P |
| 01CM2269 | CRF_11.cpx | CRF_11.cpx | nd | CRF_11.cpx | 26.7 | P |
| 01CM2270 | CRF_02.AG | CRF_02.AG | nd | U | 31.9 | P |
| 01CM2271 | CRF_11.cpx | CRF_02.AG | nd | CRF_11.cpx | 23.9 | P |
| 01CM2272 | CRF_11.cpx | na | CRF_11.cpx | na | 21.2 | P |
| 01CM2273 | CRF_11.cpx | na | CRF_11.cpx | na | 25.5 | P |
| 01CM2274 | CRF_02.AG | na | CRF_02.AG | na | 22.6 | P |
| 01CM2275 | CRF_09.cpx | CRF_02.AG | nd | CRF_09.cpx | 24.5 | P |
| 01CM2276 | CRF_11.cpx | na | CRF_11.cpx | na | 23.9 | P |
| 01CM2277 | CRF_11.cpx | CRF_11.cpx | nd | CRF_11.cpx | 21.4 | P |
| 01CM2278 | B | na | CRF_02.AG | na | 24.2 | P |
| 01CM2280 | CRF_11.cpx | CRF_02.AG | nd | CRF_02.AG | 29.8 | P |
| 01CM2281 | CRF_02.AG | CRF_02.AG | nd | CRF_02.AG | 23.4 | P |
| 01CM2284 | CRF_11.cpx | CRF_11.cpx | nd | CRF_11.cpx | 24.5 | P |
| 01CM2287 | CRF_11.cpx | na | CRF_01.AE | na | 33.2 | P |
| 02CM319 | ndf | Og | nd | O | No Tt | Nh |
a
Genotyping based on part of gag-p24 (460 bp), env-C2V3 (approximately 550 bp), pol-integrase, and env-gp41 (approximately 405 bp) regions.
b
Threshold time by LA-200.
c
Not available.
d
Agarose gel electrophoresis.
e
Positive.
f
Not detected.
g
Group O.
h
Negative.