TABLE 1.
SNP statistical information of Jining Gray goat.
| Classification | SNP count | Category | SNP count | ||
| After calling | 32,072,110 | Intergenic | 6,343,642 | ||
| After filtered | 31,864,651 | Intronic | 2,480,758 | ||
| Substitution types | SNP count | ncRNA_intronic | 369,631 | ||
| A > C | 1,301,360 | Upstream | 68,358 | ||
| A > G | 4,653,435 | Downstream | 66,938 | ||
| A > T | 1,190,733 | Exonic | 64,074 | ||
| C > A | 1,489,351 | UTR3 | 30,786 | ||
| C > G | 1,288,407 | ncRNA_exonic | 14,545 | ||
| C > T | 6,112,390 | UTR5 | 7,445 | ||
| G > A | 6,124,624 | Upstream; downstream | 1,271 | ||
| G > C | 1,298,941 | Splicing | 287 | ||
| G > T | 1,483,527 | ncRNA_splicing | 72 | ||
| T > A | 1,197,834 | Exonic; splicing | 42 | ||
| T > C | 4,644,892 | UTR5; UTR3 | 29 | ||
| T > G | 1,294,533 | ncRNA_exonic; splicing | 7 | ||
| Exonic variant | Synonymous | Non-synonymous | Stopgain | Stoploss | Unknown |
| SNP count | 35,935 | 27,443 | 354 | 57 | 111 |