Table 1.
A summary of datasets.
Platform | Cancer type | Source | Number of samples | Number of MSI-H samples | Number of MSI-L/MSS samples |
---|---|---|---|---|---|
RNA-seqa | Colon cancer | TCGA | 281 | 52 | 229 |
Endometrial cancer | 367 | 123 | 244 | ||
Esophageal cancer | 89 | 2 | 87 | ||
Gastric cancer | 415 | 80 | 335 | ||
Rectum cancer | 94 | 3 | 91 | ||
Uterine cancer | 56 | 2 | 54 | ||
Pan-cancer | 1383 | 328 | 1055 | ||
Microarray (GPL570)b | Gastric cancer | GSE13911 | 39 | 19 | 20 |
GSE62254 | 300 | 68 | 232 | ||
Colorectal cancer | GSE13067 | 74 | 11 | 63 | |
GSE13294 | 155 | 78 | 77 | ||
GSE18088 | 53 | 19 | 34 | ||
GSE26682 | 160 | 18 | 142 | ||
GSE35896 | 61 | 5 | 56 | ||
GSE39084 | 70 | 16 | 54 | ||
GSE39582 | 536 | 77 | 459 | ||
GSE75316 | 59 | 11 | 48 | ||
GSE92921 | 58 | 5 | 53 | ||
Microarray (GPL5175)c | GSE24550 | 65 | 14 | 51 | |
Microarray (GPL2986)d | GSE25071 | 46 | 5 | 41 | |
Microarray (GPL13158)b | GSE27544 | 22 | 8 | 14 | |
Microarray (GPL96)b | GSE26682 | 140 | 17 | 123 | |
GSE41258 | 168 | 35 | 133 |
Note:
Poly-A.
Affymetrix Oligonucleotide Array.
Agilent Oligonucleotide Array.
Affymetrix Exon Array.