Table 3.
The classification performance of PreMSIm (%).
| Cancer type g | Accuracy | Sensitivity | Specificity | AUC |
|---|---|---|---|---|
| Esophageal cancer | 96 | 100 | 95 | 99 |
| Rectum cancer | 91 | 67 | 92 | 79 |
| Uterine cancer | 95 | 100 | 94 | 99 |
| Gastric cancer (GSE13911) | 90 | 89 | 90 | 89 |
| Gastric cancer (GSE62254) | 88 | 78 | 91 | 87 |
| Colorectal cancer (GSE13067) | 98 | 100 | 95 | 99 |
| Colorectal cancer (GSE13294) | 92 | 86 | 99 | 96 |
| Colorectal cancer (GSE18088) | 96 | 95 | 97 | 97 |
| Colorectal cancer (GSE26682-GPL570) | 98 | 83 | 99 | 93 |
| Colorectal cancer (GSE26682-GPL96) | 70 | 82 | 68 | 81 |
| Colorectal cancer (GSE35896) | 92 | 100 | 91 | 98 |
| Colorectal cancer (GSE39084) | 93 | 100 | 91 | 99 |
| Colorectal cancer (GSE39582) | 90 | 90 | 90 | 94 |
| Colorectal cancer (GSE41258) | 77 | 60 | 82 | 82 |
| Colorectal cancer (GSE75316) | 95 | 100 | 94 | 99 |
| Colorectal cancer (GSE92921) | 95 | 80 | 96 | 89 |
| Colorectal cancer (GSE27544) | 91 | 75 | 100 | 94 |
| Colorectal cancer (GSE24550) | 88 | 100 | 84 | 94 |
| Colorectal cancer (GSE25071) | 87 | 100 | 85 | 98 |
Note:
* These prediction results were obtained by the PreMSIm R package.
g
The Esophageal, Rectum, and Uterine cancer datasets were from TCGA and the others were from GEO.