Table 1.
Sequence and genome location of oligonucleotides developed and used in this study.
| Primer Name | Sequence (5′-3′) | Gene | Location | Ref |
|---|---|---|---|---|
| IBV-pan_FW-1 | CAG TCC CDG ATG CNT GGT A | Nucleocapsid (N) | 26129–26147a | This study |
| IBV-pan_FW-2 | CAG TCC CDG ACG CGT GGT A | 26129–26147a | ||
| IBV-pan_RV | CC TTW SCA GMA ACM CAC ACT | 26230−26211a | ||
| IBV-pan_Probe | ACT GGA ACA GGA CCD GCC GCT GAC CT | Spike (SP1) | 26158–26183a | |
| IBV-HVR1-2-FW | GTK TAC TAC TAC CAR AGT GC | 79–98 | This study | |
| IIBV-HVR1-2-RV | GAA GTG RAA ACR AGA TCA CCA TTT A | 533−509)b | ||
| IBV-HVR3-FW | TAC TGG TAA TTT TTC AGA TGG | 564–584 c | Adzhar et al. (1997), modified this study | |
| IIBV-HVR3-RV | CAG AYT GCT TRC AAC CAC C | 946−928 c |