Table 3.
Parameter estimates for the analysis of calf mortality dataset: the mean, median, and standard deviation (sd) of posterior distribution from a standard Cox model (model 1), a Cox model with random herd effect (model 2), and a CMM Cox model (model 3).
Predictor/parametera | Model 1 |
Model 2 |
Model 3 |
||||||
---|---|---|---|---|---|---|---|---|---|
Mean | Median | sd | Mean | Median | sd | Mean | Median | sd | |
Twin | |||||||||
Twin vs. single | 0.145 | 0.149 | 0.199 | 0.205 | 0.208 | 0.197 | 0.213 | 0.218 | 0.202 |
Twin × Tb | −0.338 | −0.338 | 0.077 | −0.331 | −0.331 | 0.075 | −0.331 | −0.330 | 0.077 |
Calf gender | |||||||||
Male vs. female | 0.154 | 0.154 | 0.068 | 0.151 | 0.152 | 0.068 | 0.150 | 0.150 | 0.068 |
Calving assistance | |||||||||
Easy pull vs. unassisted | −0.105 | −0.103 | 0.150 | −0.050 | −0.048 | 0.151 | −0.049 | −0.046 | 0.150 |
Hard pull vs. unassisted | 0.872 | 0.877 | 0.169 | 0.921 | 0.924 | 0.173 | 0.917 | 0.920 | 0.174 |
Malpresentation vs. unassisted | 0.532 | 0.541 | 0.253 | 0.535 | 0.543 | 0.251 | 0.537 | 0.546 | 0.254 |
Surgery vs. unassisted | −1.304 | −1.202 | 0.980 | −1.243 | −1.131 | 0.976 | −1.198 | −1.090 | 0.960 |
Surgery × T | −0.737 | −0.720 | 0.300 | −0.743 | −0.725 | 0.298 | −0.739 | −0.721 | 0.294 |
Cow age | |||||||||
≤2 years old vs. 5–10 years old | 0.401 | 0.402 | 0.095 | 0.382 | 0.381 | 0.096 | 0.384 | 0.384 | 0.096 |
3 years old vs. 5–10 years old | 0.340 | 0.341 | 0.095 | 0.342 | 0.342 | 0.095 | 0.349 | 0.350 | 0.096 |
4 years old vs. 5–10 years old | 0.099 | 0.100 | 0.113 | 0.121 | 0.121 | 0.112 | 0.124 | 0.126 | 0.113 |
>10 years vs. 5–10 years old | 0.332 | 0.333 | 0.126 | 0.308 | 0.309 | 0.127 | 0.305 | 0.307 | 0.127 |
Within-herd calving prop. | |||||||||
Linear | 0.631 | 0.631 | 0.128 | 0.759 | 0.758 | 0.137 | 0.767 | 0.766 | 0.136 |
Quadratic | 1.041 | 1.040 | 0.467 | 1.233 | 1.232 | 0.473 | 1.243 | 1.243 | 0.474 |
Mean 7-day temperaturec (°C) | −0.030 | −0.030 | 0.006 | −0.090 | −0.090 | 0.006 | −0.100 | −0.100 | 0.006 |
Mean 7-day temperaturec × T | 0.100 | 0.100 | 0.003 | 0.110 | 0.110 | 0.003 | 0.110 | 0.110 | 0.003 |
Provide sheltersd | |||||||||
Yes vs. no | −0.309 | −0.310 | 0.083 | −0.325 | −0.325 | 0.144 | −0.240 | −0.240 | 0.145 |
Move calf pairse | |||||||||
Yes vs. no | −0.306 | −0.307 | 0.074 | −0.244 | −0.245 | 0.125 | −0.237 | −0.237 | 0.126 |
Animals purchasedf | |||||||||
Yes vs. no | 0.258 | 0.257 | 0.085 | 0.243 | 0.242 | 0.145 | 0.285 | 0.283 | 0.141 |
Herd variance | 0.334 | 0.327 | 0.070 | 0.272 | 0.267 | 0.062 | |||
Veterinary clinic variance | 0.024 | 0.012 | 0.030 | ||||||
Ecological region variance | 0.099 | 0.073 | 0.100 | ||||||
DIC | 14724.2 | 14566.1 | 14558.5 |
Coefficients for the 4th order polynomial of log(time) represents the baseline hazard not shown.
T is a standardized log time (log time-mean/sd) or T = [log(time in days) − 3.604]/1.062.
Coefficients × 10.
Provide shelters for calves separate from cows and heifers.
Move cow–calf pairs to a nursery pasture within 48 h of birth.
Animal purchased in the month prior to or during calving.