Table 3.
The isolate strains and other reference strains of PDCoV used for sequence alignment and phylogenetic analysis.
| Strain | Accession no. | Country | Isolated time |
|---|---|---|---|
| CH-01 | KX443143 | China/Hebi | 2016 |
| HNZK-02 | MH708123 | China/Zhoukou | 2018 |
| HNZK-04 | MH708124 | China/Zhoukou | 2018 |
| HNZK-06 | MH708125 | China/Zhoukou | 2018 |
| CHN-AH-2004 | KP757890 | China/Anhui | 2004 |
| CHJXNI2 | KR131621 | China/Jiangxi | 2015 |
| CHN-HB-2014 | KP757891 | China/Hebei | 2014 |
| CHN-JS-2014 | KP757892 | China/Jiangsu | 2014 |
| CHN-HN-2014 | KT336560 | China/Henan | 2014 |
| CH/JXJGS01/2016 | KY293677 | China/Jiangxi | 2016 |
| CH/SXD1/2015 | KT021234 | China | 2015 |
| HKU15-155 | JQ065043 | China/Hong Kong | 2010 |
| HKU15-44 | JQ065042 | China/Hong Kong | 2009 |
| Ohio137 | KJ601780 | USA | 2014 |
| Illinois134 | KJ601778 | USA | 2014 |
| Illinois121 | KJ481931 | USA | 2014 |
| Indiana453 | KR265851 | USA | 2014 |
| Minnesota159 | KR265859 | USA | 2014 |
| Minnesota292 | KR265864 | USA | 2014 |
| Minnesota | KR265853 | USA | 2013 |
| NorthCarolina452 | KR265858 | USA | 2014 |
| Arkansas61 | KR150443 | USA | 2015 |
| Michigan/8977 | KM012168 | USA | 2014 |
| Nebraska209 | KR265860 | USA | 2014 |
| OhioCVM1 | KJ769231 | USA | 2014 |
| NE3579 | KJ584359 | USA | 2014 |
| USA/IA/2014 | KJ567050 | USA | 2014 |
| PA3148 | KJ584358 | USA | 2014 |
| MI6148 | KJ620016 | USA | 2014 |
| OH1987 | KJ462462 | USA | 2014 |
| SD3424 | KJ584356 | USA | 2014 |
| Swine/Thailand/S5025 | KU051656 | Thailand | 2015 |
| PDCoV/2016/Lao | KX118627 | Lao | 2016 |
| Swine/Vietnam/Binh21/2015 | KX834352 | Vietnam | 2015 |
| KNU16-07 | KY364365.1 | South Korea | 2014 |
| KNU14-04 | KM820765 | South Korea | 2014 |