Fig. 3.

ML phylogenetic trees of AvCoV S1 gene sequences from AvCoVs detected in different animals. Phylogenetic inference using 2079 AvCoV S1 gene sequences; each colour represents different species of birds, and the arrows indicate the positions of the birds in the tree (a). Phylogenetic inference from the large ML tree highlighting the sequences obtained in the study in greater detail (b). The Shimodaira–Hasegawa (SH-like) branch supports are shown on the trees. Only values greater than or equal to 75% are shown. Abbreviations: Pon, Pigeon; Vul, Vulture; Spa, Sparrow-Hawk; Owb, Owl bush; Owl, Owl; Wpe, Woodpecker; Gre, Great kiskadee; Par, Parrot; Red, Red-ruffed fruitcrow; Haw, Hawk; BR, Brazil. Only values greater than or equal to 75% are shown. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article).