Table 2.
The mean number of amino acid residues in the sequences used for this study from the Avian coronavirus spike (S), nucleocapsid (N), non-structural protein 2 (NSP2) and papain-like protease (PLpro) genes coded by a preferred codon and the preferred codon for each aa in the Gallus gallus beta-actin (B-act), lung surfactant protein A (SFTPA1), intestinal cholecystokinin (CCK), oviduct ovomucin alpha subunit (Ovo) and kidney vitamin D receptor (ViTD rec) genes.
| Amino acid |
G. gallus |
Avian coronavirus |
|||||||
|---|---|---|---|---|---|---|---|---|---|
| S | N | Nsp2 | PLpro | B-act | CCK | Ovo | SFTPA1 | VitD rec | |
| F | 9.2 | 3 | 15.9 | 21.8 | 13 | 3 | 87 | 5 | 24 |
| L | 14.6 | 4.28 | 26.7 | 37.7 | 27 | 12 | 111 | 27 | 43 |
| I | 5.8 | 2.04 | 13.1 | 19.3 | 28 | 5 | 112 | 8 | 20 |
| V | 14.3 | 7.08 | 23.1 | 38.3 | 22 | 5 | 137 | 10 | 22 |
| S | 19.8 | 7.24 | 15.2 | 33.3 | 25 | 16 | 163.5 | 14 | 45 |
| P | 7.0 | 9.96 | 8.1 | 14.7 | 19 | 8 | 116 | 9 | 24 |
| T | 13.1 | 5.52 | 13.6 | 26.6 | 26 | 4 | 147 | 11 | 19 |
| A | 14.2 | 5.6 | 28.0 | 36.3 | 29 | 13 | 85.5 | 15 | 24.5 |
| Y | 11.0 | 1.2 | 3.0 | 19.1 | 15 | 5 | 76 | 12 | 7 |
| H | 5.3 | 0 | 1.0 | 5.3 | 9 | 4 | 46.5 | 1 | 13 |
| Q | 7.1 | 6.12 | 13.9 | 11.9 | 12 | 8 | 77.5 | 12 | 21 |
| N | 12.6 | 5.8 | 3.9 | 28.1 | 9 | 2 | 103.5 | 14 | 13 |
| K | 6.0 | 11.48 | 21.2 | 33.7 | 19 | 3 | 133.5 | 14 | 28 |
| D | 2.6 | 13.6 | 12.2 | 28.5 | 23 | 6 | 118 | 7 | 33 |
| E | 1.8 | 9.96 | 12.9 | 22.3 | 26 | 6 | 131 | 19 | 33.5 |
| C | 7.7 | 2.16 | 5.0 | 11.9 | 6 | 2 | 201 | 8 | 13 |
| R | 2.9 | 8.24 | 11.8 | 13.1 | 18 | 10.5 | 60 | 7 | 26 |
| G | 11.4 | 4.56 | 9.1 | 22.3 | 28 | 13 | 142 | 20 | 18 |
| M | 4.3 | 0 | 5.4 | 2.3 | 17 | 3 | 37 | 5 | 22 |
| W | 2.6 | 1 | 2.0 | 10.0 | 4 | 1.5 | 23 | 4 | 2 |