Table 2.
Sequences of primers.
| Region | Primer | Orientation | Nucleotide sequence (5′–3′) | Length (bp) | Reference |
|---|---|---|---|---|---|
| ORF1-1 | orf1-1f | Forward | ACCAGTTTGGCAATCACTCC | 2022 | GenBank Accession No. AY994055 |
| orf1-1r | Reverse | AGCAATAGCAGCATCGAGGT | |||
| ORF1-2 | orf1-2f | Forward | TGCTGATGCTTGGAAAGTTG | 968 | |
| orf1-2r | Reverse | TGTACCAGATGGCACCAAAA | |||
| ORF1-3 | orf1-3f | Forward | ACCTCGATGCTGCTATTGCT | 2281 | |
| orf1-3r | Reverse | GCCACCCACGTGTCTAAGAT | |||
| ORF1-4 | orf1-4f | Forward | CGTGGAAGGTTCTGGTGTTT | 1621 | |
| orf1-4r | Reverse | TAGGCCTTATCGGCATCAAC | |||
| ORF1-5 | orf1-5f | Forward | TCTTTTGGTTTGTGGCACTG | 662 | |
| orf1-5r | Reverse | ACAGGGCTGGTTTGTTCAAT | |||
| ORF1-6 | orf1-6f | Forward | AGGTCCTGTAGTGGGTGACG | 2325 | |
| orf1-6r | Reverse | GGGCAGGACTTGTCAAATGT | |||
| ORF1-7 | orf1-7f | Forward | ACCTCGACGTGACATTCTCC | 1940 | |
| orf1-7r | Reverse | TTGCCATAAGCCACCCTTAC | |||
| ORF1-8 | orf1-8f | Forward | TACTGGTTCGATGGGAGAGG | 1007 | |
| orf1-8r | Reverse | CAGTAGGCGTGAATTCGTCA | |||
| ORF1-9 | orf1-9f | Forward | GCTGGTACCTGTGGGTCAGT | 1686 | |
| orf1-9r | Reverse | GCACGAGCTTTTTCATAGGC | |||
| ORF1-10 | orf1-10f | Forward | TGTAATGCAGCCAGCTTTTG | 1202 | |
| orf1-10r | Reverse | TACCATAAGCATCGCCATCA | |||
| ORF1-11 | orf1-11f | Forward | CTTGACAAAATGGCAGAGCA | 1048 | |
| orf1-11r | Reverse | CGGTTGGTACTTGGACGAAT | |||
| ORF1-12 | orf1-12f | Forward | TGATGGCGATGCTTATGGTA | 915 | |
| orf1-12r | Reverse | CTCATGGTCCATAACGCTCTT | |||
| ORF1-13 | orf1-13f | Forward | CTGCAATTGATGGATTGTGC | 1952 | |
| orf1-13r | Reverse | TAAGCATGTTGTCCCAACCA | |||
| ORF1-14 | orf1-14f | Forward | GCGTGGATTCTTTGAAGAGG | 865 | |
| orf1-14r | Reverse | GTTTGAATCAACGCCCAAAA | |||
| ORF1-15 | orf1-15f | Forward | ATTGCACAGGCGGTTTTTAC | 1261 | |
| orf1-15r | Reverse | TTCCTTAGGGCCGATAACCT | |||
| ORF1-16 | orf1-16f | Forward | TTAGCGTTGGACCACATGAA | 1893 | |
| orf1-16r | Reverse | TGTGTGCTAAAAACGCCTTG | |||
| ORF1-17 | orf1-17f | Forward | AGGTTATCGGCCCTAAGGAA | 1806 | |
| orf1-17r | Reverse | TCTGCACTATACGGCGTCTG | |||
| ORF1-18 | orf1-18f | Forward | TGTTGCCATTACGAGAGCAA | 1105 | |
| orf1-18r | Reverse | ACCCACATCATGAATTGCAG | |||
| ORF1-19 | orf1-19f | Forward | CGGGATCTTTGAGCATGAAT | 2085 | |
| orf1-19r | Reverse | GCATCGTCTGGTAACCACCT | |||
| ORF1-20 | orf1-20f | Forward | GCTGTGAAAGGGCTTAGTGC | 1791 | |
| orf1-20r | Reverse | TGCTATTTTCCATGGCTTCC | |||
| ORF2-3-4 | Primer 1 | Forward | GCCATTCTCATTGATAAC | 1491 | Haijema et al. (2004) |
| Primer 9 | Reverse | CAGGAGCCAGAAGAAGACGCTAA | GenBank Accession No. AY994055 | ||
| ORF4-5-6 | Mpr1 | Forward | TGAATGACCTCACGTTGCAT | 1532 | GenBank Accession No. AY994055 |
| Mpr2 | Reverse | TTCCTTACGCTGGCCTTTTA | |||
| ORF5-6-7 | Primer 11 | Forward | GGTGATTACTCAACAGAAGC | 2155 | Haijema et al. (2004) |
| Primer 12 | Reverse | GACCAGTTTTAGACATCG | GenBank Accession No. AY994055 |