Table 2.
Nucleotide comparison of the full-length genomes of Korean isolates to other PEDV strains.
| Strain | Nucleotide identity (%) (No. of nucleotide differences) |
|||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KNU-141112 | KNU-141112 | KNU-141112 | KNU-1305/ | Co/13/ | IA1/ | MN/ | IN17846/ | AH2012/ | GD-B/ | JS-HZ2012/ | CV777/ | SM98-1/ | DR-13/ | |
| -feces | -P5 | -P10 | Korea/2013 | USA/2013 | USA/2013 | USA/2013 | USA/2013 | China/2012 | China/2012 | China/2012 | Belgium/1978 | Korea/1998 | Korea/1999 | |
| KNU-141112-feces | 99.9 (1) | 99.9 (3) | 99.9 (8) | 99.8 (38) | 99.8 (43) | 99.9 (12) | 99.9 (13) | 99.5 (117) | 99.2 (200) | 99.3 (180) | 96.7 (905) | 96.3 (1034) | 96.8 (882) | |
| KNU-141112-P5 | 99.9 (2) | 99.9 (9) | 99.8 (39) | 99.8 (44) | 99.9 (13) | 99.9 (14) | 99.5 (118) | 99.2 (201) | 99.3 (181) | 96.7 (906) | 96.3 (1035) | 96.8 (883) | ||
| KNU-141112-P10 | 99.9 (11) | 99.8 (41) | 99.8 (46) | 99.9 (15) | 99.9 (16) | 99.5 (120) | 99.2 (203) | 99.3 (183) | 96.7 (908) | 96.3 (1037) | 96.8 (885) | |||
| KNU-1305/Korea/2013 | 99.8 (44) | 99.8 (49) | 99.9 (18) | 99.9 (19) | 99.5 (119) | 99.2(202) | 99.3 (182) | 96.7 (905) | 96.3 (1034) | 96.8 (884) | ||||
| Co/13/USA/2013 | 99.9 (11) | 99.8 (40) | 99.8 (43) | 99.5(139) | 99.3 (192) | 99.3 (172) | 96.7 (908) | 96.3 (1037) | 96.8 (890) | |||||
| IA1/USA/2013 | 99.8 (45) | 99.8 (48) | 99.4 (144) | 99.2 (197) | 99.3 (177) | 96.7 (913) | 96.2 (1042) | 96.8 (895) | ||||||
| MN/USA/2013 | 99.9 (13) | 99.5 (119) | 99.2 (202) | 99.3 (182) | 96.7 (906) | 96.3 (1035) | 96.8 (885) | |||||||
| IN17846/USA/2013 | 99.5 (120) | 99.2 (205) | 99.3 (185) | 96.7 (910) | 96.2 (1039) | 96.8 (887) | ||||||||
| AH2012/China/2012 | 99.4 (164) | 99.4 (147) | 96.8 (896) | 96.3 (1028) | 96.8 (880) | |||||||||
| GD-B/China/2012 | 99.8 (32) | 96.8 (897) | 96.3 (1027) | 96.8 (875) | ||||||||||
| JS-HZ2012/China/2012 | 96.8 (879) | 96.4 (1009) | 96.9 (857) | |||||||||||
| CV777/Belgium/1978 | 99.4 (148) | 97.2 (651) | ||||||||||||
| SM98-1/Korea/1998 | 97.6 (782) | |||||||||||||
| DR-13/Korea/1999 | ||||||||||||||