Table 1.
Coding potential, putative transcription regulatory sequences and encoded proteins of the CCoV-I 23/03 genome.
| Putative gene |
Putative TRS |
Putative protein |
|||
|---|---|---|---|---|---|
| Gene name | Coding sequence (nt) | Start nt position | TRS sequencea | Protein name | Protein size (aa) |
| ORF1ab | 314–12,327 12,327–20,358 |
90 | UCGAACUAAACGAAAU | Pp1ab | 6681 |
| ORF1a | 314–12,358 | Pp1a | 4014 | ||
| ORF2 | 20,359–24,804 | 20,319 | AUUACUAAACUUUGG | S | 1481 |
| ORF3 | 24,812–25,435 | 24,797 | UUCAUUAAACUCAAA | 3 | 207 |
| ORF3a | 25,447–25,683 | 25,434 | AGAACUAAACAAAUG | 3a | 78 |
| ORF3b | 25,628–25,843 | 3b | 71 | ||
| ORF3c | 25,840–26,595 | 3c | 251 | ||
| ORF4 | 26,561–26,809 | 26,514 | GGUUCUAAACGAAAU | E | 82 |
| ORF5 | 26,820–27,614 | 26,807 | UGAACUAAACAAAAU | M | 264 |
| ORF6 | 27,627–28,769 | 27,611 | AUAACUAAACUUCUA | N | 380 |
| ORF7a | 28,774–29,079 | 28,762 | CGAACUAAACGAAUG | 7a | 101 |
| ORF7b | 29,084–29,725 | 7b | 213 | ||
a The conserved TRS core is underlined.