Table 3.
Percent (%) identities of CCoV-I 23/03 to Alphacoronavirus-1 reference strains in the complete genomic sequence (nucleotide, nt) and structural proteins (amino acid, aa).
| Alphacoronavirus-1 | Strain | Accession number | Identity (%) to CCoV-I 23/03 |
||||
|---|---|---|---|---|---|---|---|
| Full-length genome (nt) | S (aa) | E (aa) | M (aa) | N (aa) | |||
| CCoV-IIa | 1/71 | JQ404409 | 84.96 | 43.52 | 87.80 | 87.50 | 89.01 |
| K378 | KC175340 | 84.82 | 43.52 | 87.80 | 87.50 | 88.74 | |
| S378 | KC175341 | 84.79 | 43.52 | 86.59 | 87.50 | 88.74 | |
| TN449 | JQ404410 | 83.82 | 43.32 | 86.59 | 87.22 | 89.01 | |
| NTU366/F/2008 | GQ477367 | 84.25 | 42.74 | 86.59 | 84.33 | 88.74 | |
| CB/05 | KP981644 | 84.16 | 43.71 | 86.59 | 87.50 | 88.74 | |
| CCoV-IIb | 174/06 | EU856362 | NA | 43.39 | 84.15 | 87.12 | 88.48 |
| 341/05 | EU856361 | NA | 43.13 | 86.59 | 86.74 | 88.74 | |
| CCoV | A76 | JN856008 | 84.62 | 49.18 | 85.37 | 87.50 | 87.96 |
| FCoV-I | Black | EU186072 | 77.39 | 73.09 | 82.93 | 85.66 | 75.33 |
| FCoV-II | 79-1146 | DQ010921 | 77.43 | 43.05 | 82.93 | 84.91 | 75.85 |
| 79-1683 | JN634064 | 77.19 | 43.05 | 86.76 | 77.45 | 75.85 | |
| TGEV | Purdue | DQ811789 | 82.81 | 42.83 | 84.15 | 87.12 | 87.96 |
| PRCoV | ISU-1 | DQ811787 | 80.19 | 40.83 | 84.15 | 88.26 | 86.91 |
NA, sequence not available.