Table 4. Comparison between Running DOCK 6 Using Ligand Conformations Provided by AutoDock Vina vs Running DOCK 6 Using Original Ligands.

		AUC-ROC
family	PDB code	Dock 6	Dock 6 after AutoDock Vina	AUC-ROC curve improvement (%)
kinase	1H00	0.85	0.96	13
	2QD9	0.48	0.59	23
metalloenzyme	3BKL	0.57	0.81	42
nuclear hormone receptor	2AM9	0.35	0.46	31
	3KBA	0.56	0.56	0
folate enzyme	3NX0	0.63	0.80	27
serine protease	2AYW	0.90	0.95	6
other enzymes	1XL2	0.63	0.76	21