Table 5. Enrichment Factors EF1%, EF2%, EF5%, and EF10% for DOCK 6 Experiments Using Original Ligands and Using the Ligand Conformations Provided by AutoDock Vina.
| EF for
DOCK 6 experiments using original ligands |
EF for
DOCK 6 experiments using ligand conformations provided by AutoDock
Vina |
|||||||
|---|---|---|---|---|---|---|---|---|
| EF | EF1% | EF2% | EF5% | EF10% | EF1% | EF2% | EF5% | EF10% |
| 1H00 | 0 | 0 | 6 | 5 | 20 | 20 | 12 | 6 |
| 2QD9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 3BKL | 10 | 10 | 4 | 5 | 10 | 15 | 6 | 6 |
| 2AM9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 3KBA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 3NX0 | 0 | 0 | 2 | 3 | 0 | 5 | 6 | 5 |
| 2AYW | 10 | 5 | 10 | 5 | 10 | 5 | 12 | 6 |
| 1XL2 | 10 | 5 | 4 | 2 | 10 | 5 | 4 | 2 |