Table 1.
Oligonucleotides used for cloning of the astrovirus sequences.
Name | Sequence | Locationa | Orientation | Genbank no.b | Virus |
---|---|---|---|---|---|
FMDVFP1 | GGGTTTTACAAACCTGTGAT G | 7786-7806 | Sense | DQ248888 | FMDV |
FMDVRP1 | CCGCACACGGCGTTCACCC | 7982-7920 | Antisense | DQ248888 | FMDV |
FMDVFP2 | TAAGGACTTTGTGGTCTATG | ||||
FMDVFP2Rev | CATAGACCACAAAGTCCTTA | ||||
FMDVRP2 | GGCCTCGATGCTTGGGAGCC | Sense | |||
FMDVRP2Rev | GGCTCCCA AGCATCGAGG CC | Antisense | |||
DucPicoFP1 | AGATTGATTGAAGCCTCCAGTTTG | 6505-6528 | Sense | AY278552 | Human poliovirus 2 |
7113-7136 | Sense | AY563023 | Duck picornavirus | ||
DucPicoRP1 | ATGSWDGTNCCHGARCABCC YGADGGCAT | 6841-6869 | Antisense | AY278552 | Human poliovirus 2 |
7458-7486 | Antisense | AY563023 | Duck picornavirus | ||
DucPicoFP2 | GGAAAGGAAGATGAGGGCATTG | Sense | |||
DucPicoFP2rev | CAATGCCCTCATCTTCCTTTCC | Antisense | |||
DucPIcoRP2 | GCCAGTTTGGAGAGTATTTAC | Antisense | |||
DucPicoRP2Rev | GTAAATACTCTCCAAACTGGC | Sense | |||
CapFP | EcoR I | Sense | |||
ccGAATTCATGGCCGATAAGGCTGGGCCGC | |||||
polyT-GC | GCGCGCGCTTTTTTTTTTTTTTTTTT | Antisense | |||
CapRP | Not I | Antisense | |||
ggGCGGCCGCTAGTGATGGTGATGGTGATGCTCGGCGTGGCCGCGGCTGCTAGCAGG |
Location of the oligonucleotides in agreement with the sequences of the food and mouth disease virus (FMDV), duck picornavirus, and human poliovirus 2, respectively.
NCBI Genbank.