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. Author manuscript; available in PMC: 2020 Aug 4.
Published in final edited form as: Mol Ecol Resour. 2019 Sep 9;19(6):1497–1515. doi: 10.1111/1755-0998.13070

Figure 2. Nucleotide diversity (π) in sheep calculated from WGS data and from random and non-random panels of variants.

Figure 2

Nucleotide diversity (π) was estimated for each replicate of the different numbers of variants of the random panels and for each non-random panel. Sample sizes varied for each estimate from 10 to 30 individuals.

Random panels are denoted by their number of variants (from 1K to 5M) and non-random panels by: 50K.Chip (Illumina® ovine 50K SNP Beadchip), HD.Chip (Illumina® ovine HD Beadchip) exome (exome capture simulation), WGS (all variants extracted from whole genome sequences). For each panel of variants the sample sizes are from left to right: 10 (red), 20 (green) and 30 (yellow) individuals.