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. Author manuscript; available in PMC: 2020 Dec 14.
Published in final edited form as: Mech Ageing Dev. 2020 Jun 20;190:111284. doi: 10.1016/j.mad.2020.111284

Table 2. A survey of mitochondrial TCA cycle enzymes, comparing the reported structure and predicted stability in solution at physiological conditions. Structure and general protein information has been obtained from the UniProt (Wasmuth and Lima, 2017) database. Theoretical pi and stability predictions have been computed using the ProtParam server (Gasteiger et al., 2005). FAHD proteins are predicted to be unstable (marked in red), however, FAHD1 is understood to form a soluble and catalytic active homodimer (Pircher et al., 2011, 2015; Weiss et al., 2018a; Manjasetty et al., 2004), whereas all other unstable proteins are part of greater protein complexes (Wasmuth and Lima, 2017) (marked in green). Protein interaction of FAHD1 is likely (Huttlin et al., 2015) (see Table 3). The protein structure of FAHD2a and FAHD2b is yet unreported.

Enzyme Name UniProt-lD UniProt- Spec Theoretical pi Instability index Stability Part of a complex Structure
CS Citrate synthase 075390 CISYJHUMAN 8.45 22.40 stable no homodimer
ACO Aconitate hydratase Q99798 ACON_HUMAN 7.36 34.70 stable no monomer
IDH2 Isocitrate dehydrogenase [NADP] P48735 IDHPJHUMAN 8.88 29.77 stable no homodimer
Isocitrate dehydrogenase [NAD] subunit alpha P50213 IDH3AJHUMAN 6.46 41.24 unstable yes (IDH3) complex
IDH3 Isocitrate dehydrogenase [NAD] subunit beta 043837 DH3BJHUMAN 8.64 36.88 stable yes (IDH3) complex
Isocitrate dehydrogenase [NAD] subunit gamma P51553 IDH3GJHUMAN 8.75 45.59 unstable yes (IDH3) complex
2-oxoglutarate dehydrogenase Q02218 ODOIJHUMAN 6.39 45.17 unstable yes (OGDC) complex
OGDC Dihydrolipoyllysine-residue succinyltransferase P36957 0D02JHUMAN 9.10 50.53 unstable yes (OGDC) complex
Dihydrolipoyl dehydrogenase P09622 DLDH_HUMAN 7.95 28.07 stable yes (OGDC) complex
Succinate--CoA ligase [ADP/GDP-forming] subunit alpha P53597 SUCAJHUMAN 9.01 41.30 unstable yes (SUCA/SUCG) complex
SUC(A/G) Succinate--CoA ligase [GDP-forming] subunit beta Q96I99 SUCB2HUMAN 6.15 32.54 stable yes (SUCG) complex
Succinate--CoA ligase [ADP-forming] subunit beta Q9P2R7 SUCB1JHUMAN 7.05 41.13 unstable yes (SUCA) complex
Succinate dehydrogenase [ubiquinone] flavoprotein subunit P31040 SDHAJHUMAN 7.06 37.04 stable yes (SDH) complex
SDH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit P21912 SDHBJHUMAN 9.03 60.13 unstable yes (SDH) complex
Succinate dehydrogenase cytochrome b560 subunit Q99643 C560JHUMAN 9.74 47.79 unstable yes (SDH) complex
Succinate dehydrogenase [ubiquinone] cytochrome b small subunit 014521 DHSD_HUMAN 8.92 33.20 stable yes (SDH) complex
FH Fumarate hydratase P07954 FUMH_HUMAN 8.85 28.59 stable no homotetramer
MDH2 Malate dehydrogenase P40926 MDHM_HUMAN 8.92 31.92 stable no homodimer
FAHD1 Fumarylacetoacetate hydrolase domain containing protein 1 Q6P587 FAHD1_HUMAN 6.96 42.36 unstable likely homodimer
FAHD2a Fumarylacetoacetate hydrolase domain containing protein 2a Q96GK7 FAH2A_HUMAN 8.48 41.26 unstable unknown unknown
FAHD2b Fumarylacetoacetate hydrolase domain containing protein 2b Q6P2I3 FAH2B_HUMAN 7.64 40.43 unstable unknown unknown