Table 2.
Primers used for PIV3 detection and gene amplification.
Primers | Sequences (5′–3′) | Location (to NM09) | Target | Expected products size (bp) | Annealing temperature (°C) |
---|---|---|---|---|---|
MF1 | AGTGATCTAGATGATGATCCA | 3960–3980 | M | 329 | 50 |
MR1 | GTTATTGATCCAATTGCTGT | 4269–4288 | |||
HNF | GCCAATACAGAGAATGACTCATGA | 7210–7233 | HN | 674 | 54 |
HNR | CTCTTTGTGTTTTGCCWGGACA | 7862–7883 | |||
NF | AGGTRAGGGRGAAGARATCCT | 78–98 | 5′-UTR-N | 881 | 54 |
NR | AGAGCTGCCATTCTRGTYTCAAT | 936–958 | |||
LF | AGAGARGTBATGGATGATCTD | 11,079–11,099 | L | 545 | 54 |
LR | GAYTCRCCTGGTTCYTGATTC | 11,603–11,623 | |||
MF2 | AGCATCASMARCTCYRRAATMT | 3738–3759 | M | 1053 | 52 |
MR2 | CTATTGYYTRATYTTYCCGACYCCT | 4766–4790 | |||
FF1 | CTCATTACCTGGTGAATTCA | 4721–4740 | M-F | 1481 | 53 |
FR1 | ACAAATGCATATCKTGGYAC | 6182–6201 | |||
FF2 | ACTTCRACAGTTGAYCAATA | 5798–5817 | F-HN | 1297 | 53 |
FR2 | GTCTTGTGTTTATTCCYGAYTG | 7073–7094 |