Table 2.
Genbank accession numbers of Korea strains and the reference group A rotavirus strains used in phylogenetic analysis.
| Genes | Strains | Type | Species | Accession number | Genes | Strains | Type | Species | Accession number |
|---|---|---|---|---|---|---|---|---|---|
| VP4 | BRV033 | P[1] | Bovine | U62155 | VP4 | 19 | P[7] | Porcine | FJ870331 |
| NCDV | P[1] | Bovine | M63267 | 24 | P[7] | Porcine | FJ870332 | ||
| C486 | P[1] | Bovine | Y00127 | 25-1 | P[7] | Porcine | FJ870333 | ||
| RF | P[1] | Bovine | U65924 | 25-2 | P[7] | Porcine | FJ870334 | ||
| 11-1 | P[1] | Porcine | FJ807880 | 42-1 | P[7] | Porcine | FJ870335 | ||
| 66-1 | P[1] | Porcine | FJ870285 | 47-1 | P[7] | Porcine | FJ870336 | ||
| SA11 | P[2] | Simian | M23188 | 47-2 | P[7] | Porcine | FJ870337 | ||
| RRV | P[3] | Simian | M18736 | 49 | P[7] | Porcine | FJ870338 | ||
| RV5 | P[4] | Human | M32559 | 52 | P[7] | Porcine | FJ870339 | ||
| CJN-M | P[5] | Bovine | D16351 | 53 | P[7] | Porcine | FJ870340 | ||
| Gotffried | P[6] | Porcine | M33516 | 57 | P[7] | Porcine | FJ870341 | ||
| OSU | P[7] | Porcine | X13190 | 57-1 | P[7] | Porcine | FJ870342 | ||
| JL94 | P[7] | Porcine | AY523636 | 61-1 | P[7] | Porcine | FJ870343 | ||
| SW20/21 | P[7] | Porcine | AF427125 | 63-1 | P[7] | Porcine | FJ870344 | ||
| PP-1 | P[7] | Bovine | AF427520 | 71 | P[7] | Porcine | FJ870345 | ||
| 06-6-1 | P[7] | Porcine | FJ870288 | 71-1 | P[7] | Porcine | FJ870346 | ||
| 06-10-1 | P[7] | Porcine | FJ870289 | 74-1 | P[7] | Porcine | FJ870347 | ||
| 06-12-1 | P[7] | Porcine | FJ870290 | 75-1 | P[7] | Porcine | FJ870348 | ||
| 06-14-1 | P[7] | Porcine | FJ870291 | 78-1 | P[7] | Porcine | FJ870349 | ||
| 06-22-1 | P[7] | Porcine | FJ870292 | 80-1 | P[7] | Porcine | FJ870350 | ||
| 06-42-2 | P[7] | Porcine | FJ870293 | 82-1 | P[7] | Porcine | FJ870351 | ||
| 06-44-2 | P[7] | Porcine | FJ870294 | 85 | P[7] | Porcine | FJ870352 | ||
| 06-46-2 | P[7] | Porcine | FJ870295 | 85-1 | P[7] | Porcine | FJ870353 | ||
| 06-54-1 | P[7] | Porcine | FJ870296 | 90-1 | P[7] | Porcine | FJ870354 | ||
| 06-61-3 | P[7] | Porcine | FJ870297 | 95-1 | P[7] | Porcine | FJ870355 | ||
| 06-121 | P[7] | Porcine | FJ870298 | 97-1 | P[7] | Porcine | FJ870356 | ||
| 06-176-10 | P[7] | Porcine | FJ870299 | 100-1 | P[7] | Porcine | FJ870357 | ||
| 06-235 | P[7] | Porcine | FJ870300 | 104-1 | P[7] | Porcine | FJ870358 | ||
| 06-258-1 | P[7] | Porcine | FJ870301 | 115-1 | P[7] | Porcine | FJ870359 | ||
| 06-261-4 | P[7] | Porcine | FJ870302 | 122-1 | P[7] | Porcine | FJ870360 | ||
| 07-2 | P[7] | Porcine | FJ870303 | 131 | P[7] | Porcine | FJ870361 | ||
| 07-08-1 | P[7] | Porcine | FJ870304 | 140-1 | P[7] | Porcine | FJ870362 | ||
| 07-10-1 | P[7] | Porcine | FJ870305 | 141-1 | P[7] | Porcine | FJ870363 | ||
| 07-12-3 | P[7] | Porcine | FJ870306 | 150-1 | P[7] | Porcine | FJ870364 | ||
| 07-13-2 | P[7] | Porcine | FJ870307 | 156-1 | P[7] | Porcine | FJ870365 | ||
| 07-14-1 | P[7] | Porcine | FJ870308 | 157-1 | P[7] | Porcine | FJ870366 | ||
| 07-15-1 | P[7] | Porcine | FJ870309 | 174-1 | P[7] | Porcine | FJ870367 | ||
| 07-16-1 | P[7] | Porcine | FJ870310 | 187-1 | P[7] | Porcine | FJ870368 | ||
| 07-17-1 | P[7] | Porcine | FJ870311 | 205-1 | P[7] | Porcine | FJ870369 | ||
| 07-17-2 | P[7] | Porcine | FJ870312 | 208-1 | P[7] | Porcine | FJ870370 | ||
| 07-25 | P[7] | Porcine | FJ870313 | 210-1 | P[7] | Porcine | FJ870371 | ||
| 07-26-1 | P[7] | Porcine | FJ870314 | A-1 | P[7] | Porcine | FJ870372 | ||
| 07-28-7 | P[7] | Porcine | FJ870315 | B-1 | P[7] | Porcine | FJ870373 | ||
| 07-33-2 | P[7] | Porcine | FJ870316 | C-1 | P[7] | Porcine | FJ870374 | ||
| 07-61-3 | P[7] | Porcine | FJ870317 | D-1 | P[7] | Porcine | FJ870375 | ||
| 07-74-1 | P[7] | Porcine | FJ870318 | E-1 | P[7] | Porcine | FJ870376 | ||
| 07-95-1 | P[7] | Porcine | FJ870319 | H-1 | P[7] | Porcine | FJ870377 | ||
| 07-109-8 | P[7] | Porcine | FJ870320 | I-1 | P[7] | Porcine | FJ870378 | ||
| 07-117-2 | P[7] | Porcine | FJ870321 | Wa | P[8] | Human | L34161 | ||
| 07-134-7 | P[7] | Porcine | FJ870322 | K8 | P[9] | Human | D90260 | ||
| 07-214-1 | P[7] | Porcine | FJ870323 | 69M | P10] | Human | M60600 | ||
| 1 | P[7] | Porcine | FJ870324 | KK3 | P11] | Bovine | D13393 | ||
| 2 | P[7] | Porcine | FJ870325 | FI23 | P[12] | Equine | D16342 | ||
| 3 | P[7] | Porcine | FJ870326 | MDR13 | P[13] | Porcine | L07886 | ||
| 4 | P[7] | Porcine | FJ870327 | Sun9 | P[14] | Bovine | AB158430 | ||
| 8-1 | P[7] | Porcine | FJ870328 | LP14 | P[15] | Ovine | L11599 | ||
| 8-2 | P[7] | Porcine | FJ870329 | Eb | P[16] | Murine | L18992 | ||
| 16 | P[7] | Porcine | FJ870330 | PO-13 | P[17] | Pigion | AB009632 | ||
| VP4 | L338 | P[18] | Equine | D13399 | VP7 | 74-1 | G[5] | Porcine | FJ807831 |
| MC345 | P[19] | Human | D38054 | 75-1 | G[5] | Porcine | FJ807832 | ||
| EHP | P[20] | Murine | U08424 | 78-1 | G[5] | Porcine | FJ807833 | ||
| Hg18 | P[21] | Bovine | AF237665 | 80-1 | G[5] | Porcine | FJ807834 | ||
| 160/01 | P[22] | Lapine | AF526374 | 82-1 | G[5] | Porcine | FJ807835 | ||
| A34 | P[23] | Porcine | AY174094 | 85 | G[5] | Porcine | FJ807836 | ||
| JP32-4 | P[23] | Porcine | AB176689 | 85-1 | G[5] | Porcine | FJ807837 | ||
| Hokkaido-14 | P[23] | Porcine | AB176684 | 95-1 | G[5] | Porcine | FJ807838 | ||
| 06-52-1 | P[23] | Porcine | FJ870286 | 97-1 | G[5] | Porcine | FJ807839 | ||
| 06-285 | P[23] | Porcine | FJ870287 | 100-1 | G[5] | Porcine | FJ807840 | ||
| TUCH | P[24] | Simian | AY596189 | 104-1 | G[5] | Porcine | FJ807841 | ||
| Dhaka6 | P[25] | Human | AY773004 | 110-1 | G[5] | Porcine | FJ807842 | ||
| 134/04-15 | P[26] | Porcine | DQ061053 | 115-1 | G[5] | Porcine | FJ807843 | ||
| CMP034 | P[27] | Porcine | DQ534016 | 122-1 | G[5] | Porcine | FJ807844 | ||
| ECU534 | P[28] | Bovine | EU805773 | 131 | G[5] | Porcine | FJ807845 | ||
| Azuk-1 | P[29] | Bovine | AB454420 | 140-1 | G[5] | Porcine | FJ807846 | ||
| Ch-02V0002G3 | P[30] | Chicken | EU486965 | 150-1 | G[5] | Porcine | FJ807847 | ||
| Ch-06V0661 | P[31] | Chicken | EU486962 | 187-1 | G[5] | Porcine | FJ807848 | ||
| VP7 | Wa | G[1] | Human | M21843 | 205-1 | G[5] | Porcine | FJ807849 | |
| S2 | G[2] | Human | M11164 | 210-1 | G[5] | Porcine | FJ807850 | ||
| RRV | G[3] | Simian | Z32535 | B-1 | G[5] | Porcine | FJ807851 | ||
| Gotffried | G[4] | Porcine | X06386 | E-1 | G[5] | Porcine | FJ807852 | ||
| OSU | G[5] | Porcine | X04613 | I-1 | G[5] | Porcine | FJ807853 | ||
| JL94 | G[5] | Porcine | AY538665 | NCDV | G[6] | Bovine | M12394 | ||
| KJ44 | G[5] | Bovine | DQ494393 | Erv99 | G[6] | Equine | DQ981478 | ||
| 06-6-1 | G[5] | Porcine | FJ807788 | Ch2 | G[7] | Avian | X56784 | ||
| 06-10-1 | G[5] | Porcine | FJ807789 | BRV16 | G[8] | Bovine | AB077058 | ||
| 06-12-1 | G[5] | Porcine | FJ807790 | Sun9 | G[8] | Bovine | AB158431 | ||
| 06-61-3 | G[5] | Porcine | FJ807791 | KAG80 | G[8] | Bovine | AB077055 | ||
| 06-258-1 | G[5] | Porcine | FJ807792 | NGRBg8 | G[8] | Bovine | AF361439 | ||
| 07-08-1 | G[5] | Porcine | FJ807793 | 06-46-2 | G[8] | Porcine | FJ807854 | ||
| 07-10-1 | G[5] | Porcine | FJ807794 | 06-54-1 | G[8] | Porcine | FJ807879 | ||
| 07-12-3 | G[5] | Porcine | FJ807795 | 06-176-10 | G[8] | Porcine | FJ807855 | ||
| 07-14-1 | G[5] | Porcine | FJ807796 | 06-261-4 | G[8] | Porcine | FJ807856 | ||
| 07-15-1 | G[5] | Porcine | FJ807797 | 07-28-7 | G[8] | Porcine | FJ807857 | ||
| 07-16-1 | G[5] | Porcine | FJ807798 | 07-109-8 | G[8] | Porcine | FJ807858 | ||
| 07-17-1 | G[5] | Porcine | FJ807799 | 07-134-7 | G[8] | Porcine | FJ807859 | ||
| 07-17-2 | G[5] | Porcine | FJ807800 | 11-1 | G[8] | Porcine | FJ807860 | ||
| 07-20-1 | G[5] | Porcine | FJ807801 | 42-1 | G[8] | Porcine | FJ807861 | ||
| 07-25 | G[5] | Porcine | FJ807802 | 141-1 | G[8] | Porcine | FJ807862 | ||
| 07-26-1 | G[5] | Porcine | FJ807803 | 156-1 | G[8] | Porcine | FJ807863 | ||
| 07-33-2 | G[5] | Porcine | FJ807804 | 157-1 | G[8] | Porcine | FJ807864 | ||
| 07-61-3 | G[5] | Porcine | FJ807805 | 174-1 | G[8] | Porcine | FJ807865 | ||
| 07-74-1 | G[5] | Porcine | FJ807806 | 208-1 | G[8] | Porcine | FJ807866 | ||
| 07-95-1 | G[5] | Porcine | FJ807807 | A-1 | G[8] | Porcine | FJ807867 | ||
| 07-95-3 | G[5] | Porcine | FJ807808 | C-1 | G[8] | Porcine | FJ807868 | ||
| 07-117-2 | G[5] | Porcine | FJ807809 | D-1 | G[8] | Porcine | FJ807869 | ||
| 07-214-1 | G[5] | Porcine | FJ807810 | W161 | G[9] | Human | EF672623 | ||
| 3 | G[5] | Porcine | FJ807811 | Au32 | G[9] | Human | AB045372 | ||
| 4 | G[5] | Porcine | FJ807812 | F45 | G[9] | Human | AB180970 | ||
| 8-1 | G[5] | Porcine | FJ807813 | 116E | G[9] | Human | L14072 | ||
| 8-2 | G[5] | Porcine | FJ807814 | 95H115 | G[9] | Human | AB045373 | ||
| 16 | G[5] | Porcine | FJ807815 | 97CM108 | G[9] | Human | AY866504 | ||
| 19 | G[5] | Porcine | FJ807816 | MW69 | G[9] | Human | AJ250545 | ||
| 24 | G[5] | Porcine | FJ807817 | N23 | G[9] | Human | AJ491177 | ||
| 25-1 | G[5] | Porcine | FJ807818 | 3710CM | G[9] | Human | AY816184 | ||
| 25-2 | G[5] | Porcine | FJ807819 | US1205 | G[9] | Human | AF060487 | ||
| 47-1 | G[5] | Porcine | FJ807820 | US321 | G[9] | Human | AJ250275 | ||
| 47-2 | G[5] | Porcine | FJ807821 | BS1414/02 | G[9] | Human | DQ822599 | ||
| 49 | G[5] | Porcine | FJ807822 | 6222LP | G[9] | Human | AF529871 | ||
| 52 | G[5] | Porcine | FJ807823 | PH301 | G[9] | Human | AJ491184 | ||
| 53 | G[5] | Porcine | FJ807824 | BD524 | G[9] | Human | AJ250543 | ||
| 57 | G[5] | Porcine | FJ807825 | R136 | G[9] | Human | AF438228 | ||
| 57-1 | G[5] | Porcine | FJ807826 | Bulumkutu | G[9] | Human | AF359358 | ||
| 61-1 | G[5] | Porcine | FJ807827 | 3298CM | G[9] | Human | DQ647423 | ||
| 63-1 | G[5] | Porcine | FJ807828 | MD28 | G[9] | Human | AB297791 | ||
| 71 | G[5] | Porcine | FJ807829 | CAU202 | G[9] | Human | EF059922 | ||
| 71-1 | G[5] | Porcine | FJ807830 | KNIH-13 | G[9] | Human | DQ990319 | ||
| VP7 | KUMS04-102 | G[9] | Human | DQ056300 | VP7 | 06-44-2 | G[9] | Porcine | FJ807874 |
| E192 | G[9] | Human | EU708592 | 06-52-1 | G[9] | Porcine | FJ807875 | ||
| E205 | G[9] | Human | EU708591 | 06-121 | G[9] | Porcine | FJ807876 | ||
| L865 | G[9] | Human | EU708599 | 06-235 | G[9] | Porcine | FJ807877 | ||
| L880 | G[9] | Human | EU708601 | 06-285 | G[9] | Porcine | FJ807878 | ||
| CMP003 | G[9] | Porcine | AY707787 | 1 | G[9] | Porcine | FJ807870 | ||
| 97'SZ | G[9] | Human | EU486975 | 2 | G[9] | Porcine | FJ807871 | ||
| OM46 | G[9] | Human | AJ491181 | B223 | G[10] | Bovine | X57852 | ||
| OM67 | G[9] | Human | AJ491179 | YM | G[11] | Porcine | M23194 | ||
| Hokkaido-14 | G[9] | Porcine | AB176677 | L26 | G[12] | Human | M58290 | ||
| JP3-6 | G[9] | Porcine | AB176678 | L338 | G[13] | Equine | D13549 | ||
| JP13-3 | G[9] | Porcine | AB176679 | FI23 | G[14] | Equine | M61876 | ||
| JP16-3 | G[9] | Porcine | AB176680 | Hg18 | G[15] | Bovine | AF237666 | ||
| JP29-6 | G[9] | Porcine | AB176681 | EW | G[16] | Murine | U08430 | ||
| JP32-4 | G[9] | Porcine | AB176682 | Ty1 | G[17] | Turkey | D82980 | ||
| JP35-7 | G[9] | Porcine | AB176683 | PO-13 | G[18] | Pigion | D82979 | ||
| T203 | G[9] | Human | AY003871 | 02V0002G3 | G[19] | Chicken | FJ169859 | ||
| K-1 | G[9] | Human | AB045374 | Ecu534 | G[20] | Bovine | Ecu805775 | ||
| 99-Sp1904 | G[9] | Human | AB091754 | Azuk-1 | G[21] | Bovine | AB454421 | ||
| 06-22-1 | G[9] | Porcine | FJ807872 | Tu-03V0002E10 | G[22] | Turkey | EU486973 | ||
| 06-42-2 | G[9] | Porcine | FJ807873 | HUN | G[23] | Pheasant | FN393056 |