Table 2.
Genome organization and predicted viral proteins encoded by pheasant coronaviruses I0623/17 (I0710/17).
| Gene | Genome position | Size (nucleotide) | Size (amino acid) | Identity to IBV (%) | Most-related lineage/strain | |
|---|---|---|---|---|---|---|
| 5′ UTR | 1-529 | 529 | – | 97.9 | GI-19 | |
| ORF 1a/1ab | NSP2 | 530-2551 | 2022 | 674 | 90.0 | GI-19 |
| NSP3 | 2552-7318 | 4767 | 1588 | 90.6 | GI-22 | |
| NSP4 | 7319-8866 | 1548 | 516 | 92.7 | GI-19 | |
| NSP5 | 8867-9787 | 921 | 307 | 91.1 | GI-22 | |
| NSP6 | 9788-10669 | 882 | 284 | 94.7 | GI-22 | |
| NSP7 | 10670-10918 | 249 | 83 | 98.8 | 1114/14 | |
| NSP8 | 10919-11548 | 630 | 210 | 93.2 | GI-22 | |
| NSP9 | 11549-11881 | 333 | 111 | 92.8 | DK/CH/HN/ZZ2004 | |
| NSP10 | 11882-12316 | 435 | 145 | 94.5 | DK/CH/HN/ZZ2004 | |
| NSP11 | 12317-12385 | 69 | 23 | – | – | |
| NSP12 | 12317-15135 | 2819 | 931 | 94.9 | GI-19 | |
| NSP13 | 15136-16935 | 1800 | 600 | 93.0 | GI-19 | |
| NSP14 | 16936-18498 | 1563 | 521 | 93.9 | GI-22 | |
| NSP15 | 18499-19512 | 1014 | 338 | 93.1 | GI-19 | |
| NSP16 | 19612-20446 | 834 | 278 | 95.2 | GI-19 | |
| S | S1 | 20372-21991 | 1620 | 540 | 92.4 | GI-19 |
| S2 | 21992-23869 | 1878 | 626 | 98.4 | GI-19 | |
| ORF 3 | 3a | 23869-24042 | 174 | 58 | 99.4 | GI-19 |
| 3b | 24042-24236 | 195 | 65 | 100 | GI-9 | |
| 3c (E) | 24217-24546 | 330 | 110 | 95.7 | GI-19 | |
| M | 24518-25195 | 678 | 226 | 95.3 | GI-29 | |
| ORF 4b | 25196-25480 | 285 | 95 | 91.2 | GI-19 | |
| ORF 5a | 25559-25756 | 198 | 66 | 92.4 | GI-19 | |
| ORF 6 | 25849-26091 | 243 | 81 | 87.0 | GI-19 | |
| N | 26034-27260 | 1227 | 409 | 92.5 | GI-19 | |
| 3′ UTR | 27261-27640 | 380 | – | 98.4 | GI-19 | |