Table 2.
Primers used in this study. Numbers refer to position in FCoV laboratory strain Black genome (accession number EU186072).
| Primer | Sequence (5′–3′) | Position Black genome (EU186072) | Reference |
|---|---|---|---|
| SM-r1 | TTTGCATAAAGGTCTTATAGGCATC | 26012–26036 | This study |
| S-TMD-2 | TGGCTCAACAGGATTGAAACTTATG | 24583–24607 | This study |
| SM-r2 | ACCCAAATTGCAACATACCATGC | 25953–25975 | This study |
| S-TMD-1 | TGGCCTTGGTATGTGTGGCTAC | 24613–24634 | This study |
| N1-sense | GCCAACAAACACACCTGGAAG | 27569–27590 | This study |
| N2-sense | AACTTTGGTGATAGTGATCTCG | 27648–27669 | This study |
| 3a-8rev | GCCWATRGACTTGACAGTGTCCAT | 24809–24833 | This study |
| S702sense | TGCACTGATTATAACATATATGG | 22507–22529 | This study |
| S1464rev | GTGAATGTGAACCTTTTCAATAGG | 24772–24795 | This study |
| S726sense | GGCCTTTACTACACATCTATTAGTG | 22579–22603 | This study |
| SC-3a-sense | GGTCTTGGCACTGTGGATGATGATTA | 23374–23399 | This study |
| SC-3a-rev | ATCACTCATCTGAGGTTTTCTAGGTTG | 24259–24285 | This study |
| SC-3b-sense | TGTGCCCAATATTACAATGGCATAATGG | 23440–23467 | This study |
| SC-3b-rev | TTACGAGGAGTCACCATATACGT | 24229–24251 | This study |
| SC-4a-sense | GTGACGGCATGGTCAGGAATATGTGTT | 24142–24168 | This study |
| SC-4b-sense | TATGCATATGTGTTGAAAGAYTT | 24178–24200 | This study |
| FCoV-M-03F | ATGATGCCTATAAGACCTTTATGC | 26009–26032 | This study |
| FCoV-M-04R | ACGTCTTTTGGAAGGTTCATCTCC | 26919–26942 | This study |
| FCoV-M-06R | TGACGCGTTGTCCCTGTG | 26896–26913 | This study |
| p204 | GCTCTTCCATTGTTGGCTCGTC | 29138–29159 | Herrewegh et al. (1995a) |
| p211 | CACTAGATCCAGACGTTAGCTC | 29156–29177 | Herrewegh et al. (1995a) |
| Chang-sense | CAATATTACAATGGCATAATGG | 23446–23467 | Chang et al. (2012) |
| Chang-antisense | CCCTCGAGTCCCGCAGAAACCATACCTA | 24033–24060 | Chang et al. (2012) |
| Chang-nested-sense | GGCATAATGGTTTTACCTGGTG | 23458–23479 | Chang et al. (2012) |
| Chang-nested-antisense | TAATTAAGCCTCGCCTGCACTT | 23579–23600 | Chang et al. (2012) |