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. 2019 Nov 2;240:108491. doi: 10.1016/j.vetmic.2019.108491

Table 1.

Patient characteristics and read information for each sample that was sequenced by ViroCap.

Patient Species Sexa Age (yrs) Lesion Tissue Typeb Location Comments Raw read count
OSCC1 Feline MC 15 FOSCC FFPE Gingiva N/A 5,739,653
OSCC2 Feline MC 17 FOSCC FFPE Gingiva N/A 7,513,118
OSCC3 Feline MC 14 FOSCC FFPE Tongue N/A 7,096,542
OSCC4 Feline MC 11 FOSCC FFPE Gingiva N/A 6,687,626
OSCC5 Feline MC 15 FOSCC FFPE Gingiva N/A 4,291,620
OSCC6 Feline FS 17 FOSCC FFPE Gingiva N/A 6,882,619
OSCC7 Feline FS 16 FOSCC FFPE N/A N/A 5,772,965
OSCC8 Feline MC 14 FOSCC FFPE Gingiva N/A 24,800,351
OSCC9 Feline MC 18 FOSCC FFPE Gingiva N/A 5,155,381
OSCC10 Feline MC 16 FOSCC FFPE Gingiva N/A 6,325,271
OSCC11 Feline MC 14 FOSCC FFPE Tongue N/A 6,165,815
OSCC12 Feline FS 19 FOSCC FFPE N/A N/A 7,099,389
OSCC13 Feline FS 16 FOSCC FFPE Tongue N/A 6,733,059
OSCC14 Feline FS 15 FOSCC FFPE N/A N/A 6,403,217
OSCC15 Feline MC 18 FOSCC FFPE Gingiva N/A 7,474,897
OSCC16 Feline FS 12 FOSCC FFPE Gingiva N/A 9,158,237
OSCC17 Feline FS 14 FOSCC FFPE Gingiva N/A 6,639,860
OSCC18 Feline FS 15 FOSCC FFPE Gingiva N/A 3,732,410
OSCC19 Feline FS 11 FOSCC FFPE Tongue N/A 6,354,314
OSCC20 Feline FI 14 FOSCC FFPE Tongue N/A 7,086,469
N1 Feline FS Adult Normal FF Gingiva and tongue Surrendered. Euthanized due to complications associated with chronic kidney disease. FeLV/FIV negative on SNAP test. 27,638,607
N2 Feline FS Adult Normal FF Gingiva and tongue Healthy stray cat. FeLV+/FIV- on SNAP test. Confirmatory testing not done. Euthanized due to diagnosis of FeLV. 27,740,803
N3 Feline MI Adult Stomatitis FF Gingiva and tongue Healthy stray cat. FIV+/FeLV- on SNAP test. Confirmatory testing not done. Euthanized due to diagnosis of FIV. 21,060,857
N4 Feline FS 6 Normal FF Gingiva and tongue Euthanized due to leukemia. FeLV/FIV - on SNAP test 19,796,205
N5 Feline N/A Adult Normal FF Gingiva and tongue Stray cat. Death due to trauma. FeLV/FIV status unknown. 20,603,477
N6 Feline FS Adult Normal FF Gingiva and tongue Euthanized due to endocarditis. FeLV/FIV - on SNAP test 49,712,932
N7 Feline FS Adult Normal FF Gingiva and tongue Euthanized due to suspected FIP. Presumptive diagnosis based on macroscopic necropsy. FeLV/FIV status unknown. 21,198,071
N8 Feline MC 5 Normal FF Gingiva and tongue Euthanized due to pulmonary hypertension from angiomatosis. FeLV/FIV - on SNAP test 32,636,457
N9 Feline N/A Adult Normal FF Gingiva and tongue Stray cat. Euthanized due to large ulcerative lesion on nasal planum. Suspect squamous cell carcinoma. FeLV/FIV status unknown. 20,714,975
PV1 Feline MC 12 Sarcoid, less likely sarcoma FFPE Pinna N/A 5,695,092
PV2 Canine FI 2 Papilloma FFPE Skin Identified as CPV-6 on ViroCap 24,972,777
PV3 Canine MI 5 Papilloma FFPE Lip Identified as CPV-1 on ViroCap 23,334,663
PV4 Canine MC N/A Papilloma FFPE Tongue Identified as CPV-1 on ViroCap 21,799,472
PV5 Equine MC 8 Sarcoid FFPE Skin Identified as BPV-1 on ViroCap 9,292,084
PV6 Feline FS 2 Papilloma FFPE Oral N/A 4,631,420
PV7 Feline FS 18 Papilloma FFPE Oral N/A 5,848,794
PV8 Feline MC 13 Sarcoid FFPE Skin N/A 6,658,664
a

FS (female spayed), FI (female intact), MC (male castrated) or MI (male intact).

b

Formalin fixed paraffin embedded (FFPE) or fresh frozen (FF).