Table 2.
Complete papillomavirus variant genomes identified by ViroCap in FOSCC samples.
| Patient | New Complete Genome Name | GenBank Accession | Genome Size (bp) | Closest relative (GenBank Accession) | Genera | % Analogous (genome)a | SBSb | Indelsc | Read countd | DoCe | BoCf | Physical form |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OSCC8 | Felis catus papillomavirus 3, isolate Missouri | KY825188.1 | 7583 | FcaPV-3 (NC_021472.1) | TauPV | 99.93% | 4 | None | 2,188,150 | 34,636x | 100% | Circularized |
a
Percentage analogous was calculated with Clustal Omega.
b
Single base substitutions.
c
IN (insertion) or DEL (deletion).
d
Reads that primarily mapped to the specified virus. Counts reported after deduplication with Picard.
e
DoC: depth of coverage.
f
BoC: breadth of coverage.