Table 2. Marker polymorphism and diversity parameters across studied IC populations in Rwanda.

Loci	MAF	NG	NA	NE	NPA	He	Ho	PIC	I	Fis	Fit	Fst	Nm	HWE pV
ADL0112	0.499	27	16	2.720	6	0.632	0.594	0.572	1.318	0.097	0.128	0.034	7.006	0.000
ADL0268	0.245	39	14	6.241	3	0.840	0.582	0.820	2.022	0.176	0.306	0.158	1.332	0.000
ADL0278	0.300	39	12	5.349	4	0.813	0.548	0.789	1.885	0.252	0.283	0.041	5.869	0.000
LEI0094	0.392	45	17	4.360	3	0.771	0.714	0.744	1.867	0.017	0.034	0.017	14.344	0.000
LEI0192	0.317	66	22	5.699	4	0.825	0.775	0.806	2.149	-0.005	0.036	0.041	5.829	0.000
LEI0234	0.177	77	17	8.902	2	0.888	0.569	0.878	2.393	0.338	0.354	0.024	10.202	0.000
MCW0014	0.512	29	10	3.107	1	0.678	0.486	0.645	1.493	0.142	0.263	0.142	1.517	0.000
MCW0016	0.317	39	15	4.699	4	0.787	0.772	0.759	1.841	0.002	0.023	0.021	11.392	0.000
MCW0020	0.305	29	8	4.661	0	0.785	0.720	0.753	1.676	0.050	0.095	0.047	5.027	0.000
MCW0034	0.351	46	14	5.211	5	0.808	0.775	0.788	1.927	-0.003	0.032	0.035	6.965	0.191
MCW0037	0.500	1	2	2.000	0	0.500	1.000	0.375	0.693	-1.000	-1.000	0.000		0.000
MCW0067	0.395	31	11	3.573	1	0.720	0.680	0.679	1.622	0.038	0.137	0.103	2.181	0.000
MCW0069	0.339	26	10	3.671	0	0.728	0.739	0.680	1.503	-0.011	0.028	0.038	6.309	0.104
MCW0078	0.766	11	5	1.650	0	0.394	0.369	0.372	0.820	-0.006	0.006	0.011	21.491	0.015
MCW0081	0.494	42	11	3.001	1	0.667	0.560	0.622	1.483	0.126	0.156	0.034	7.140	0.000
MCW0098	0.465	27	9	2.571	1	0.611	0.523	0.535	1.176	0.105	0.170	0.072	3.212	0.000
MCW0103	0.708	9	6	1.736	2	0.424	0.375	0.349	0.693	0.131	0.160	0.033	7.343	0.000
MCW0104	0.489	43	18	3.271	4	0.694	0.649	0.662	1.701	0.066	0.096	0.033	7.385	0.000
MCW0111	0.595	21	8	2.440	0	0.590	0.483	0.550	1.226	0.110	0.141	0.035	6.800	0.000
MCW0123	0.523	38	14	3.103	3	0.678	0.640	0.650	1.568	0.015	0.031	0.016	15.002	0.000
MCW0165	0.635	7	4	1.924	0	0.480	0.302	0.386	0.755	0.325	0.341	0.024	10.050	0.000
MCW0183	0.292	34	11	5.516	3	0.819	0.659	0.796	1.873	0.119	0.189	0.080	2.885	0.000
MCW0206	0.394	24	9	3.992	2	0.750	0.699	0.714	1.583	-0.004	0.044	0.048	5.000	0.000
MCW0222	0.400	11	6	2.972	2	0.664	0.646	0.600	1.210	-0.030	0.023	0.051	4.641	0.000
MCW0248	0.679	6	4	1.816	1	0.449	0.492	0.366	0.713	-0.236	-0.185	0.041	5.864	0.344
MCW0284	0.368	29	8	3.900	0	0.744	0.689	0.706	1.620	0.050	0.117	0.070	3.321	0.000
MCW0295	0.465	34	13	3.482	3	0.713	0.579	0.680	1.632	0.131	0.214	0.096	2.341	0.000
MCW0330	0.302	26	11	5.376	5	0.814	0.615	0.790	1.827	0.147	0.281	0.157	1.339	0.000
Mean	0.437	30.571	10.893	3.819	2.140	0.688	0.616	0.645	1.510	0.041	0.089	0.054	6.060
Total			305		60

MAF, major allele frequency; NG, number of genotypes; NA, number of alleles; NPA, number of private allele; Ne, number of effective alleles; I, Shannon's information index; He, expected heterozygosity; Ho, observed heterozygosity; PIC, polymorphic information content, Nm: number of migrants, F, inbreeding coefficient over all populations (F_IS), among populations (F_IT) and within populations (F_ST), HWE pV, Hardy-Weinberg equilibrium p-value based on chi square test (There is a deviation from HWE at p<0.05)