TABLE 1.

General genomic features from P. americana Bacteroidetes isolates

Parameter	Dysgonomonas					Bacteroides				Paludibacter	Parabacteroides
	PAD511	PAD520	PAD521	PAD25	PAD216	PAB51	PAB519	PAB214	PAB224	PAR221	PAP52
No. of scaffolds	159	70	263	59	54	350	163	53	128	103	61
Estimated genome size (Mb)	3.78	3.91	5.24	3.75	3.18	6.18	5.55	3.39	4.48	3.11	3.01
Coverage per base (×)	312	447	199	304	430	159	99	144	122	434	419
N50	106,899	141,582	51,575	315,951	141,940	80,268	89,892	225,770	87,256	51,319	136,473
G+C content (%)	41.72	38.92	40.76	42.54	37.38	42.77	39.34	41.37	39.42	39.89	43.04
No. of:
CDS genes	3,109	3,337	4,557	3,285	2,679	4,815	4,434	2,711	3,757	2,603	2,413
rRNAsa (16S, 5.8S, 23S)	4 (1, 2, 1)	3 (1, 1, 1)	3 (1, 1, 1)	4 (1, 2,1)	3 (1, 1, 1)	3 (1, 1, 1)	6 (1, 3, 2)	3 (1, 1, 1)	4 (1, 2, 1)	3 (1, 1, 1)	3 (1, 1, 1)
tRNAs	39	47	44	44	50	50	54	53	51	42	54
Noncoding RNAs	11	12	29	15	9	39	21	7	16	10	9
CDS-coding genome (%)	88.1	88.3	84.2	89.6	90.1	89.7	90	91.7	90.6	86.1	89.6
Genome completeness (%)b	99.3	99.1	99.1	98.8	99.5	99.3	99.8	98.5	99.8	97.1	98.6
Closest cultivated organism (% identity)c	Dysgonomonas gadei (79.2)	Dysgonomonas capnocytophagoides (69)	Dysgonomonas gadei (81.8)	Dysgonomonas gadei (71.3)	Dysgonomonas macrotermitis (69.2)	Bacteroides fragilis (79)	Bacteroides nordii (79.4)	Bacteroides nordii (76.5)	Bacteroides fragilis (78.8)	Paludibacter propionicigenes (70)	Parabacteroides gordonii (78.7)

^aPresence is scored if complete ribosomal gene is found in the corresponding genome contigs.

^bCompleteness based on BUSCO analysis using the Bacteroidetes BUSCO database.

^cBased on average amino acid identity (AAI).