Table 2.
The mean SNP alpha-diversity at genome level (including all his or her chromosomes) averaged across the all individual in same population (summarized from Table S4 for the alpha-diversity at genome level in the 1000-Genomes Project).
| Populations | q = 0 | q = 1 | q = 2 | q = 3 | q = 4 | |
|---|---|---|---|---|---|---|
| AFR | Mean | 56306.8 | 15167.778 | 6165.103 | 3150.498 | 1928.773 |
| Std. Err. | 36.5 | 8.351 | 3.501 | 2.524 | 2.050 | |
| AMR | Mean | 53678.6 | 14461.986 | 5898.441 | 2993.577 | 1813.559 |
| Std. Err. | 53.3 | 12.357 | 5.677 | 4.671 | 3.989 | |
| EUR | Mean | 53311.0 | 14403.534 | 5906.719 | 3000.368 | 1812.331 |
| Std. Err. | 37.5 | 8.616 | 3.892 | 3.023 | 2.532 | |
| EAS | Mean | 53318.6 | 14392.431 | 5870.595 | 2968.880 | 1792.056 |
| Std. Err. | 37.4 | 8.425 | 3.842 | 3.200 | 2.747 | |
| SAS | Mean | 53542.3 | 14458.647 | 5903.536 | 2994.627 | 1812.465 |
| Std. Err. | 38.1 | 8.860 | 4.089 | 3.245 | 2.708 | |
| *The following is summarized from Table S5 containing the p-values of Wilcoxon tests for the differences in the alpha-diversity of the whole genome between each pair of populations | ||||||
| Percentage (%) of pairs (of populations) with significant differences | q = 0 | q = 1 | q = 2 | q = 3 | q = 4 | |
| 90 | 80 | 70 | 70 | 70 | ||
*Summarized from Table S5: The p-value of Wilcoxon tests for the SNP-alpha diversity of the whole genome among different ethnic groups (populations).