Table 2.
Known and putative novel PVs sequences in healthy skin (HS) and actinic keratosis (AK) samples. The number of sequences and corresponding reads are reported for alpha, beta, gamma and unclassified PVs, stratified according to the primer set, by RAxML-EPA taxonomic classification.
|
PV genus |
Known PVs sequences N (reads) |
KNOWN PVs |
Putative new PV sequences N (reads) |
UNKNOWN PVs |
||||||
|---|---|---|---|---|---|---|---|---|---|---|
| HS |
AK |
HS |
AK |
|||||||
| FAP59/64 PV sequences N (reads) |
FAPM1 PV sequences N (reads) |
FAP59/64 PV sequences N (reads) |
FAPM1 PV sequences N (reads) |
FAP59/64 Unique PV sequences (N reads) |
FAPM1 Unique PV sequences (N reads |
FAP68/64 Unique PV sequences (N reads) |
FAPM1 Unique PV sequences (N reads) |
|||
| alpha | 2 (121) | 0 (0) | 2 (54) | 0 (0) | 1 (67) | 0 | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| beta | 61 (976,693) | 54 (311,187) | 60 (174,731) | 54 (253,407) | 57 (237,368) | 27 (3459) | 9 (1878) | 6 (206) | 6 (675) | 6 (700) |
| gamma | 131 (208,932) | 67 (46,262) | 91 (39,306) | 85 (61,128) | 87 (62,236) | 16 (376) | 4 (153) | 7 (117) | 0 (0) | 5 (106) |
| unclassified PV | 1 (18,701) | 1 (1510) | 1 (8678) | 1 (2568) | 1 (5945) | 4 (74) | 0 (0) | 0 (0) | 1 (14) | 3 (60) |
| Total | 195 (1,204,447) | 122 (358,959) | 154 (222,769) | 140 (317,103) | 146 (305, 616) | 47 (3909) | 13 (2031) | 13 (323) | 7 (689) | 14 (866) |