Table 2.
Concordance Rates across 96 HapMap Samples Genotyped on the MVP 1.0 Array
| − | − | Metrics over RecommendedaMarkers | Metrics over All Markers | ||
|---|---|---|---|---|---|
| Population | Number of Samples | Average Sample Concordance (%) | Average Sample Call Rate (%) | Average Sample Concordance (%) | Average Sample Call Rate (%) |
| ALL | 96 | 99.70 | 99.85 | 99.35 | 99.49 |
| CEU | 28 | 99.70 | 99.85 | 99.34 | 99.47 |
| CHB | 20 | 99.70 | 99.86 | 99.37 | 99.51 |
| JPT | 20 | 99.68 | 99.84 | 99.35 | 99.51 |
| YRI | 28 | 99.71 | 99.86 | 99.34 | 99.49 |
a
Recommended markers are those that were classified into one of the recommended SNP classes after execution of the Axiom Best Practices Genotyping workflow for the 96 co-clustered samples.