Table 3.
Comparison of the virome reads between non-poly(A) selected RNA-seq (non-poly(A)) with poly(A) selected RNA-seq (poly(A)) from first group of lung tissue. The numbers correspond to the average virome reads per million human mapped reads
| Viruses | Non-poly(A) | Poly(A) | ||
|---|---|---|---|---|
| Controls | IPF | Controls | IPF | |
| Cytomegalovirus | 0.15 | 0.18 | 0.00 | 0.80 |
| Hepatitis C virus genotype 2 | 2.05 | 2.57 | 0.00 | 0.04 |
| Hepatitis C virus genotype 6 | 0.49 | 0.61 | 0.00 | 0.00 |
| Hepatitis C virus genotype 1 | 0.15 | 0.16 | 0.00 | 0.03 |
| Tick-borne encephalitis virus | 0.23 | 0.22 | 0.00 | 0.00 |
| Abelson murine leukemia virus | 0.09 | 0.14 | 0.06 | 0.05 |
| Shamonda virus | 0.08 | 0.09 | 9.15 | 3.52 |
| Cutthroat trout virus | 0.02 | 0.02 | 0.00 | 0.00 |
| Murine type C retrovirus | 0.02 | 0.01 | 0.00 | 0.00 |
| Simbu virus | 0.02 | 0.02 | 0.10 | 0.08 |
| Moloney murine leukemia virus | 0.02 | 0.00 | 0.03 | 0.02 |
| Herpesvirus 2 | 0.01 | 0.01 | 0.00 | 0.00 |
| Epstein-barr virus | 0.01 | 0.01 | 0.00 | 0.00 |
| Herpesvirus 6B | 0.01 | 0.00 | 0.00 | 0.00 |
| Adenovirus C | 0.00 | 0.00 | 0.00 | 0.05 |
| Immunodeficiency virus 1 | 0.00 | 0.00 | 0.00 | 0.03 |
| Papillomavirus 110 | 0.00 | 0.00 | 0.00 | 0.02 |
| Mouse mammary tumor virus | 0.00 | 0.00 | 0.03 | 0.03 |
| HERV-K | 96.35 | 94.04 | 29.36 | 52.11 |
| HERV-W | 4.58 | 4.00 | 0.21 | 0.44 |
| HERVs | 102.80 | 99.41 | 32.87 | 54.39 |