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. 2008 Mar 3;149(1):49–55. doi: 10.1016/j.jviromet.2008.01.009

Table 1.

Nucleotide sequences of primers and fluorogenic probe

Primer or probea Sequence (5′ → 3′)b Tm (°C)c Locationd within the genome Size (bp) GC content (%)
Forward primer CCCAAGCTGATGACACCTTTG 59.2 2869–2889 21 52.38%
Reverse primer AATCCAGAGGCTCATCCTGGT 58.6 2945–2965 21 52.38%
Probe FAM-CGCGTAGAACTGTGACA ACAACGCTGA-TAMRA 68.8 2915–2941 27 51.85%
a

Primers and probe were designed by using Primer Express V2.0 software.

b

FAM fluorescent reporter dye and with TAMRA the quencher dye.

c

Melting temperature estimated by Primer Express 2.0 primer test document, dyes are not accounted for in the calculations.

d

Nucleotide positions are based on GenBank EF641008.