Table 1. Basic statistics of RNA-seq reads obtained from 12 libraries.
| Sample | Clean data (bp) | Clean reads num |
HQ clean data (bp) | HQ clean reads num (%) |
Adapter (%) | Low quality (%) | poly A (%) | N (%) |
|---|---|---|---|---|---|---|---|---|
| 28S1 | 7,248,282,600 | 48,321,884 | 7,036,617,191 | 47,491,286 (98.28) | 301,530 (0.62) | 524,164 (1.08) | 11 (0) | 2,441 (0.01) |
| 28S2 | 6,382,584,900 | 42,550,566 | 6,163,481,119 | 41,679,946 (97.95) | 240,588 (0.57) | 629,556 (1.48) | 8 (0) | 230 (0.00) |
| 28S3 | 6,636,738,600 | 44,244,924 | 6,417,371,237 | 43,394,204 (98.08) | 265,830 (0.60) | 584,444 (1.32) | 3 (0) | 220 (0.00) |
| 4S1 | 6,222,662,700 | 41,484,418 | 6,008,313,279 | 40,646,634 (97.98) | 266,786 (0.64) | 570,552 (1.38) | 7 (0) | 216 (0.00) |
| 4S2 | 7,840,323,600 | 52,268,824 | 7,581,545,439 | 51,217,238 (97.99) | 305,172 (0.58) | 730,956 (1.40) | 15 (0) | 7,714 (0.03) |
| 4S3 | 7,932,055,800 | 52,880,372 | 7,683,042,395 | 51,881,556 (98.11) | 310,230 (0.59) | 672,336 (1.27) | 14 (0) | 8,111 (0.03) |
| 28W1 | 7,404,752,400 | 49,365,016 | 7,180,601,844 | 48,458,954 (98.16) | 283,500 (0.57) | 607,390 (1.23) | 10 (0) | 7,576 (0.03) |
| 28W2 | 7,129,653,000 | 47,531,020 | 6,897,653,432 | 46,579,764 (98.00) | 270,716 (0.57) | 666,158 (1.4) | 19 (0) | 7,172 (0.03) |
| 28W3 | 8,087,136,900 | 53,914,246 | 7,843,866,798 | 52,953,200 (98.22) | 301,946 (0.56) | 642,532 (1.19) | 13 (0) | 8,271 (0.03) |
| 4W1 | 9,033,641,700 | 60,224,278 | 8,752,058,406 | 59,093,420 (98.12) | 386,554 (0.64) | 726,226 (1.21) | 8 (0) | 9,031 (0.03) |
| 4W2 | 8,177,355,000 | 54,515,700 | 7,920,965,399 | 53,481,182 (98.1) | 339,772 (0.62) | 678,208 (1.24) | 2 (0) | 8,267 (0.03) |
| 4W3 | 7,721,091,300 | 51,473,942 | 7,481,296,627 | 50,496,588 (98.1) | 333,700 (0.65) | 627,856 (1.22) | 7 (0) | 7,892 (0.03) |
Note:
28S1, 28S2 and 28S3 were three replications for 28S; 4S1 4S2 and 4S3 were three replications for 4S; 28W1, 28W2 and 28W3 were three replications for 28W; 4W1, 4W2 and 4W3 were three replications for 4W.