Table 3. Top 10 genes in winter and spring B. napus ecotypes based on O2PLS analysis.

Type	Gene ID	Log2 fold change	Bin code	Bin name
Spring B. napus
	BnaC04g53300D	−1.01	–	–
	BnaA06g29540D	1.03	27.3.25	RNA.regulation of transcription
	BnaA06g07470D	1.07	27.3.3	RNA.regulation of transcription
	BnaA05g33810D	1.07	8.3	TCA/org transformation
	BnaA05g04890D	1.15	10.5.1.1	cell wall.cell wall proteins
	BnaC09g48200D	1.16	27.3.67	RNA.regulation of transcription
	BnaC05g19620D	1.31	26.2	misc.UDP glucosyl and glucoronyl transferases
	BnaC04g24040D	1.32	–	–
	BnaC08g00430D	1.45	16.8.1.21	secondary metabolism.flavonoids.anthocyanins
	BnaA06g05310D	1.58	15.2	metal handling.binding
Winter B. napus
	BnaC09g50620D	−1.03	29.4	protein.postranslational modification
	BnaC01g40370D	−1.00	29.4	protein.postranslational modification
	BnaCnng50490D	−1.42	31.1	cell.organization
	BnaC02g02500D	−1.19	31.4	cell.vesicle transport
	BnaC01g38970D	−1.27	31.4	cell.vesicle transport
	BnaC01g38880D	−1.59	13.1.4.5.1	amino acid metabolism
	BnaC02g01650D	−1.17	27.3.73	RNA.regulation of transcription
	BnaC08g45130D	−1.04	4.1.6	glycolysis.cytosolic branch
	BnaC02g02430D	−1.32	–	–
	XLOC_042135	−1.15	–	–